Browse Element(s) Details


Os.4058.1.S1_at

Description gb:AK066240.1
DB_XREF= gi:32976258
TID=Os.4058.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052B04, full insert sequence.
FL= gb:AK061952.1 gb:AK066240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4672010/11phosphatidylinositol transfer-like protein III, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4058.1.S1_at--1035--7311Chr05:26964463..26964487 (25 bp)
GTGCAGGCGCTCGAAACGAAGCCAT
LOC_Os05g46720
Os.4058.1.S1_at--1046--5411Chr05:26964480..26964504 (25 bp)
GAAGCCATCCGAGATGCCATTTGAA
LOC_Os05g46720
Os.4058.1.S1_at--534--8211Chr05:26964510..26964534 (25 bp)
GGAATTGCTGAATGCAGCCGTCCGC
LOC_Os05g46720
Os.4058.1.S1_at--967--5291NONE
GAAGGCTCTCTATGAAGCCCTGATG
NONE
Os.4058.1.S1_at--884--5771Chr05:26964754..26964778 (25 bp)
GACGAGCTGCTTGCGTACATTGACA
LOC_Os05g46720
Os.4058.1.S1_at--812--9071Chr05:26964906..26964930 (25 bp)
TGCTTCTAGCAGCTCAACGACGAGT
LOC_Os05g46720
Os.4058.1.S1_at--796--3151Chr05:26964932..26964956 (25 bp)
AATTCTCCATACACAGAGCTGTTCG
LOC_Os05g46720
Os.4058.1.S1_at--303--5251Chr05:26965046..26965070 (25 bp)
GAATCCAACAATAACACCACGGTAT
LOC_Os05g46720
Os.4058.1.S1_at--603--4311Chr05:26965094..26965118 (25 bp)
CCTTGAGGTGTTGTTGGCTGGTCAT
LOC_Os05g46720
Os.4058.1.S1_at--251--631Chr05:26965133..26965157 (25 bp)
ATGCATCGTCTTGTGCTGGAGGGTC
LOC_Os05g46720
Os.4058.1.S1_at--830--6131Chr05:26965151..26965175 (25 bp)
GAGGGTCCTGGCTGCTGTAAATTAA
LOC_Os05g46720
Target Sequence 
GTGCAGGCGCTCGAAACGAAGCCATCCGAGATGCCATTTGAAAAGGAGGAATTGCTGAATGCAGCCGTCCGCCGTGTGGA
TGCATTAGAAGCCGAGTTAATCTCTACAAAGAAGGCTCTCTATGAAGCCCTGATGCGGCAGGACGAGCTGCTTGCGTACA
TTGACAAGCAAGATATGATCAAGTTTCGTAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
CAGAGCTGTTCGTGTATATTTGGATCAATTAATCACCACGAATATGAATGAATGCAGCTAGTTTGGAGTGTAAAATTAAA
AGTGTGCATATGGCAAATTGAGAATCCAACAATAACACCACGGTATCGGTATGTGAGTTACAAGGTGGACCTTGAGGTGT
TGTTGGCTGGTCATTCAGAATCCAGACGATGCATCGTCTTGTGCTGGAGGGTCCTGGCTGCTGTAAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis