Browse Element(s) Details


Os.49992.1.S1_s_at

Description gb:AK119499.1
DB_XREF= gi:37989122
TID=Os.49992.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E05, full insert sequence.
FL= gb:AK119499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4677011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49992.1.S1_s_at--467--8931Chr05:27003646..27003670 (25 bp)
TGACCCCTCTTAGTGTTGGCAACAA
LOC_Os05g46770
Os.49992.1.S1_s_at--210--9811Chr05:27003686..27003710 (25 bp)
TAAAAAGTCCAAGAGTCCAGCAGTG
LOC_Os05g46770
Os.49992.1.S1_s_at--548--7651Chr05:27003733..27003757 (25 bp)
GGGAGTACAATGACCTTCAAAGGAG
LOC_Os05g46770
Os.49992.1.S1_s_at--1085--3071Chr05:27003761..27003785 (25 bp)
AATCAGCCTAATGCAATCCATGTTG
LOC_Os05g46770
Os.49992.1.S1_s_at--933--5171Chr05:27003785..27003809 (25 bp)
GCAAGTTATGCAGGATGTCGCCGAA
LOC_Os05g46770
Os.49992.1.S1_s_at--158--2351Chr05:27003819..27003843 (25 bp)
AAAGCCGCCGAAGCCGAAAGGAGAG
LOC_Os05g46770
Os.49992.1.S1_s_at--495--971Chr05:27003837..27003861 (25 bp)
AGGAGAGCCGCGGAAGCCCATATGA
LOC_Os05g46770
Os.49992.1.S1_s_at--920--5411Chr05:27003849..27003873 (25 bp)
GAAGCCCATATGATAGCCGCCGAAG
LOC_Os05g46770
Os.49992.1.S1_s_at--1--9731Chr05:27003875..27003899 (25 bp)
TCAAGCCAACGCTCATGAGATGAAG
LOC_Os05g46770
Os.49992.1.S1_s_at--76--3291Chr05:27003953..27003977 (25 bp)
CAAAGCTGTTCATGGGCGTGGTCAA
LOC_Os05g46770
Os.49992.1.S1_s_at--923--7571Chr05:27003966..27003990 (25 bp)
GGGCGTGGTCAACATTACCCAGAAT
LOC_Os05g46770
Target Sequence 
TGACCCCTCTTAGTGTTGGCAACAAAAGGACGAGTCCAAGTAAAAAGTCCAAGAGTCCAGCAGTGAGGGCAATGGTTAGC
AACATGAGGGAGTACAATGACCTTCAAAGGAGCAAAATCAGCCTAATGCAATCCATGTTGCAAGTTATGCAGGATGTCGC
CGAAGCCNAACGGAAAGCCGCCGAAGCCGAAAGGAGAGCCGCGGAAGCCCATATGATAGCCGCCGAAGCTCAAGCCAACG
CTCATGAGATGAAGATTAAAAAGGTACTCGAGNTGGCCGGAGTGTGGGGTCACTCCAGAAGGAAGCCCAAAGCTGTTCAT
GGGCGTGGTCAACATTACCCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49992.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis