Browse Element(s) Details


OsAffx.27346.1.S1_at

Description tigr:9633.m04400
TID=OsAffx.27346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g46820OsAffx.15131.1.S1_at11/115+27034055..27035050hypothetical protein
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27346.1.S1_at--452--9111Chr05:27018360..27018384 (25 bp)
TGCTGCCGATGCTGATGCTTCACGT
LOC_Os05g46790
OsAffx.27346.1.S1_at--718--6331Chr05:27018367..27018391 (25 bp)
GATGCTGATGCTTCACGTCGTCCTG
LOC_Os05g46790
OsAffx.27346.1.S1_at--9--4531Chr05:27018418..27018442 (25 bp)
GCCGCTCGCGCTCGGACATGGACAT
LOC_Os05g46790
OsAffx.27346.1.S1_at--114--851Chr05:27018435..27018459 (25 bp)
ATGGACATCGTCTGCTGGAGTCGTC
LOC_Os05g46790
OsAffx.27346.1.S1_at--861--9412Chr05:27018455..27018479 (25 bp)
TCGTCGCCGCCGGTTATAATGCTGC
LOC_Os05g46790
OsAffx.27346.1.S1_at--1001--4452Chr05:27019867..27019891 (25 bp)
GCCGGTTATAATGCTGCCGACCGAC
NONE
OsAffx.27346.1.S1_at--536--4451Chr05:27018568..27018592 (25 bp)
GCCTCAGTCAAATCGGCCGGTGACG
LOC_Os05g46790
OsAffx.27346.1.S1_at--488--7651Chr05:27018626..27018650 (25 bp)
GGGAGGGCGCCGACCAATACTCCGC
LOC_Os05g46790
OsAffx.27346.1.S1_at--118--7491Chr05:27018666..27018690 (25 bp)
GTGGGTCGACGAAGCCGCTCTCCGA
LOC_Os05g46790
OsAffx.27346.1.S1_at--975--5011Chr05:27018733..27018757 (25 bp)
GCAGGGAAACAAGCCGCCTATCACG
LOC_Os05g46790
OsAffx.27346.1.S1_at--1031--9211Chr05:27018760..27018784 (25 bp)
TCCACGTCTCCGAACAAGCACGGAT
LOC_Os05g46790
Target Sequence 
TGCTGCCGATGCTGATGCTTCACGTCGTCCTGCTCGCTCCTCCGCTGCTCCAAGCTCGGCCGCTCGCGCTCGGACATGGA
CATCGTCTGCTGGAGTCGTCGCCGCCGGTTATAATGCTGCCGACCGACGACGGCGAGGCCGTGGCCGCCGCCTCGCCGGG
ACTGGATGTGCCGGGACAGCTGGGACGATCCGGCGGGGCGCCGCCGCCGCCTCAGTCAAATCGGCCGGTGACGCCGCTGG
CCGGGGTCGACGGCGGCGTGTCGGGGGGGAGGGCGCCGACCAATACTCCGCCGTCGCCTCAGCCGGGTGGGTCGACGAAG
CCGCTCTCCGACGACGACGGGAAGCCGCCGCTGGGGATCGCTCCGCCGTCGCCGCAGGGAAACAAGCCGCCTATCACGTC
TCCACGTCTCCGAACAAGCACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis