Browse Element(s) Details


Os.11389.1.S1_at

Description gb:AK060378.1
DB_XREF= gi:32970396
TID=Os.11389.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D07, full insert sequence.
FL= gb:AK060378.1 gb:AK099343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0272911/11MAP3K-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11389.1.S1_at--67--9811Chr09:1226013..1226037 (25 bp)
TAACCGGACTTCCTCTTCTGTAAAT
LOC_Os09g02729
Os.11389.1.S1_at--1048--10011Chr09:1225966..1225990 (25 bp)
TAGAATTCAAGTCACCTGCTTCAGC
LOC_Os09g02729
Os.11389.1.S1_at--564--4851Chr09:1225896..1225920 (25 bp)
GCTACTGCTAGGTCTTGTGTTGATC
LOC_Os09g02729
Os.11389.1.S1_at--26--9811Chr09:1225869..1225893 (25 bp)
TAAGCCGTTTTGATCTTTCAGGCAT
LOC_Os09g02729
Os.11389.1.S1_at--1057--6291Chr09:1225830..1225854 (25 bp)
GATGAGTTTGCCACGTTTCTTTTTC
LOC_Os09g02729
Os.11389.1.S1_at--152--10311Chr09:1225809..1225833 (25 bp)
TTTCGTTTTTAATGTCTCCTATGTG
LOC_Os09g02729
Os.11389.1.S1_at--947--1291Chr09:1225726..1225750 (25 bp)
AGAGTTACGGTCTGGTCTGTTTGGC
LOC_Os09g02729
Os.11389.1.S1_at--969--7171Chr09:1225712..1225736 (25 bp)
GTCTGTTTGGCTGTCTGACCTGAGA
LOC_Os09g02729
Os.11389.1.S1_at--1010--9611Chr09:1225678..1225702 (25 bp)
TCATGCCTGCTCGATATGTTCTAGG
LOC_Os09g02729
Os.11389.1.S1_at--118--10551Chr09:1225660..1225684 (25 bp)
TTCTAGGCTAGCACCTTACGTTGTA
LOC_Os09g02729
Os.11389.1.S1_at--851--7671Chr09:1225588..1225612 (25 bp)
GGGTTGGCACCAATGTTCTACACGG
LOC_Os09g02729
Target Sequence 
TAACCGGACTTCCTCTTCTGTAAATGGAAACGTATATTCAGGAACTATAGAATTCAAGTCACCTGCTTCAGCAGCCAGCA
TTTCGAATGCTAACATCCCTAGTAAATTTGTTNGTTTGCTACTGCTAGGTCTTGTGTTGATCATTAAGCCGTTTTGATCT
TTCAGGCATTCNTTTTTTCTTTTGATGAGTTTGCCACGTTTCTTTTTCGTTTTTAATGTCTCCTATGTGATGGGATTACA
ATTACAGTAAGTAATCTTGTTAGCCATCTAGGCTAGAATAGATTCAGAGAGTTACGGTCTGGTCTGTTTGGCTGTCTGAC
CTGAGAAATTTCCTCTCATGCCTGCTCGATATGTTCTAGGCTAGCACCTTACGTTGTACCCATCACGAAGTAATACAAAG
AAATTGANTGGATTAATGGTCCTATGGGTTGGCACCAATGTTCTACACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis