Browse Element(s) Details


Os.51029.1.S1_at

Description gb:AK068597.1
DB_XREF= gi:32978614
TID=Os.51029.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153N07, full insert sequence.
FL= gb:AK068597.1 gb:AK060240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein
LOC_Os09g02780OsAffx.6153.1.S1_at11/119+1271405..1271941SRF-type transcription factor family protein
LOC_Os09g02790OsAffx.17546.1.S1_at11/119+1277420..1281979zinc-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51029.1.S1_at--1013--6071Chr09:1255450..1255474 (25 bp)
GAGTACCAGTCCACCTACGCGATGA
LOC_Os09g02770
Os.51029.1.S1_at--725--5071Chr09:1255753..1255777 (25 bp)
GCAGCCACGGATGATGCTTGGTGAT
LOC_Os09g02770
Os.51029.1.S1_at--632--2571Chr09:1255782..1255806 (25 bp)
AACGGTTTTCATTCGATTCTCCACT
LOC_Os09g02770
Os.51029.1.S1_at--549--6571Chr09:1255796..1255820 (25 bp)
GATTCTCCACTAGTTTTGTTTTGTT
LOC_Os09g02770
Os.51029.1.S1_at--734--6051Chr09:1255828..1255852 (25 bp)
GAGATTCATCGCTAGTTTTACTTCA
LOC_Os09g02770
Os.51029.1.S1_at--512--6791Chr09:1255842..1255866 (25 bp)
GTTTTACTTCAGTTCGAATCCTTCT
LOC_Os09g02770
Os.51029.1.S1_at--350--4931Chr09:1255871..1255895 (25 bp)
GCTTGGGCTGAAATCGGCCAAAATT
LOC_Os09g02770
Os.51029.1.S1_at--1043--2231Chr09:1255891..1255915 (25 bp)
AAATTGTTCATGTTTTTACTTCACT
LOC_Os09g02770
Os.51029.1.S1_at--670--10471Chr09:1255906..1255930 (25 bp)
TTACTTCACTTCTTTGCACCTATAT
LOC_Os09g02770
Os.51029.1.S1_at--717--311Chr09:1255929..1255953 (25 bp)
ATACTGTATTCCTGTCTCTACTTAC
LOC_Os09g02770
Os.51029.1.S1_at--979--7612Chr09:1255959..1255983 (25 bp)
GGGAACTATACCTGAACCATTGTTT
LOC_Os09g02770
Target Sequence 
GAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGAT
GTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCNCCGTGGAGGCCGCGGTGAAGGAGGTGCTGA
CGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCAC
GCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGC
TTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACT
TCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATA
TACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis