Browse Element(s) Details


OsAffx.6153.1.S1_at

Description tigr:9637.m00121
TID=OsAffx.6153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0278011/11SRF-type transcription factor family protein
LOC_Os09g028301/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein
LOC_Os09g02780OsAffx.6153.1.S1_at11/119+1271405..1271941SRF-type transcription factor family protein
LOC_Os09g02790OsAffx.17546.1.S1_at11/119+1277420..1281979zinc-binding protein, putative, expressed
LOC_Os09g02800OsAffx.6154.1.S1_at11/119+1284630..1285442hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6153.1.S1_at--290--4171Chr09:1271878..1271902 (25 bp)
CGCCGTGCGGACCTCTTCAAGATGG
LOC_Os09g02780
OsAffx.6153.1.S1_at--232--9131Chr09:1271873..1271897 (25 bp)
TGCGGACCTCTTCAAGATGGCGAGC
LOC_Os09g02780
OsAffx.6153.1.S1_at--838--2791Chr09:1271860..1271884 (25 bp)
AAGATGGCGAGCGAGCTGTCCGTTC
LOC_Os09g02780
OsAffx.6153.1.S1_at--1048--4071Chr09:1271853..1271877 (25 bp)
CGAGCGAGCTGTCCGTTCATTTCAA
LOC_Os09g02780
OsAffx.6153.1.S1_at--102--9291Chr09:1271842..1271866 (25 bp)
TCCGTTCATTTCAACGCCGACGTGG
LOC_Os09g02780
OsAffx.6153.1.S1_at--922--3491Chr09:1271759..1271783 (25 bp)
CATGGACCGCTTCCTGTCGTCGTTG
LOC_Os09g02780
OsAffx.6153.1.S1_at--664--3931Chr09:1271718..1271742 (25 bp)
CGGCGGAGACCGAGCCAGAGCCAGA
LOC_Os09g02780
OsAffx.6153.1.S1_at--625--5931Chr09:1271666..1271690 (25 bp)
GAGCAGGCTGTGTGGCCAGCTGCAG
LOC_Os09g02780
OsAffx.6153.1.S1_at--491--1052Chr09:1324347..1324371 (25 bp)
AGGTGGGTCGCATGGCGCCGGAGGA
LOC_Os09g02830
OsAffx.6153.1.S1_at--634--771Chr09:1271523..1271547 (25 bp)
ATGTGCTGGCCCTGGTGACTAAGCT
LOC_Os09g02780
OsAffx.6153.1.S1_at--917--4191Chr09:1271514..1271538 (25 bp)
CCCTGGTGACTAAGCTGGCGGTGCT
LOC_Os09g02780
Target Sequence 
CGCCGTGCGGACCTCTTCAAGATGGCGAGCGAGCTGTCCGTTCATTTCAACGCCGACGTGGCGGCTGTCGTCTTCTCCCC
CGCCGGCAACAGGGCCTACTCCATCGGCGACCCGTCGGTCATGGACCGCTTCCTGTCGTCGTTGCCGGCGCCGGCGCCGC
CGGCGGAGACCGAGCCAGAGCCAGAGGTGGATTGGTCGGTGATGGAGGAGCTGAGCAGGCTGTGTGGCCAGCTGCAGGCC
ATGGTGGACGCGCACAAGGCGCGCCTGGAGAAGGCGGAGGAGAAGCTTCGCGAGAGCGGCGCGGCGGCGTGGATGATGGA
TCTGGAGGCGGAGGTGGGTCGCATGGCGCCGGAGGATGTGCTGGCCCTGGTGACTAAGCTGGCGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis