Browse Element(s) Details


OsAffx.6154.1.S1_at

Description tigr:9637.m00123
TID=OsAffx.6154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02780OsAffx.6153.1.S1_at11/119+1271405..1271941SRF-type transcription factor family protein
LOC_Os09g02790OsAffx.17546.1.S1_at11/119+1277420..1281979zinc-binding protein, putative, expressed
LOC_Os09g02800OsAffx.6154.1.S1_at11/119+1284630..1285442hypothetical protein
LOC_Os09g02810Os.15542.1.S1_at11/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_at2/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_x_at1/119+1297966..1311555CBF/Mak21 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6154.1.S1_at--1089--6131Chr09:1285379..1285403 (25 bp)
GAGGGTGGAATATCACTCCCATATC
LOC_Os09g02800
OsAffx.6154.1.S1_at--142--4391Chr09:1285339..1285363 (25 bp)
CCAATGACTCTACCTGGCAGATCAA
LOC_Os09g02800
OsAffx.6154.1.S1_at--968--7751Chr09:1285308..1285332 (25 bp)
GGTGCAATGCATTTGGGATGCCATC
LOC_Os09g02800
OsAffx.6154.1.S1_at--62--7991Chr09:1285293..1285317 (25 bp)
GGATGCCATCAAGATCACGGCTGAT
LOC_Os09g02800
OsAffx.6154.1.S1_at--661--6591Chr09:1285239..1285263 (25 bp)
GTTGGCATGTCTTTTTGGGCCCGTC
LOC_Os09g02800
OsAffx.6154.1.S1_at--1009--4531Chr09:1285221..1285245 (25 bp)
GCCCGTCCCAGATGATGTATTGCAA
LOC_Os09g02800
OsAffx.6154.1.S1_at--386--5611Chr09:1285149..1285173 (25 bp)
GACAAGGTACCTTAGTGTTGATCAA
LOC_Os09g02800
OsAffx.6154.1.S1_at--6--4331Chr09:1284874..1284898 (25 bp)
CCATTGGCTGCCTCAAAGCATTTGA
LOC_Os09g02800
OsAffx.6154.1.S1_at--484--3651Chr09:1284806..1284830 (25 bp)
CTTCTCACCACTCATAGCATTGATG
LOC_Os09g02800
OsAffx.6154.1.S1_at--445--7451Chr09:1284723..1284747 (25 bp)
GTGTCAAGAGTTAGGCACTTTTCAT
LOC_Os09g02800
OsAffx.6154.1.S1_at--523--2911Chr09:1284671..1284695 (25 bp)
AAGGAAACAACACTCCTTACCTCTG
LOC_Os09g02800
Target Sequence 
GAGGGTGGAATATCACTCCCATATCCGATGCTCACTTCCACCAATGACTCTACCTGGCAGATCAACATGGAGGTGCAATG
CATTTGGGATGCCATCAAGATCACGGCTGATGAGGTCATGGAAAAGAAGGACAAGGCGGCGTTGGCATGTCTTTTTGGGC
CCGTCCCAGATGATGTATTGCAACAGATCGCCAAGAAGAAGACAATGAAAGAGGCTTGGAAGAGCCTAAAGACAAGGTAC
CTTAGTGTTGATCAAGTGAAAAAGGCGCGGGAGGCCATTGGCTGCCTCAAAGCATTTGAGGAGAGGATACGGAAGCACAG
TGATAATGATGGGGAGCAGCTGCTTCTCACCACTCATAGCATTGATGGTGGTGTTGGTCGAGGTCACAACAAGAGGTTTG
ATAAATTTAAGGTGATGTGCTATAAGTGTCAAGAGTTAGGCACTTTTCATATGAATGTCCAGAGAAAAAAAAAAGGGAAG
GAAACAACACTCCTTACCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis