Browse Element(s) Details


Os.52150.1.S1_x_at

Description gb:AK065301.1
DB_XREF= gi:32975319
TID=Os.52150.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N22, full insert sequence.
FL= gb:AK065301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4597011/11Glutamate dehydrogenase, putative, expressed
LOC_Os03g123001/11HEAT repeat family protein, expressed
LOC_Os09g028101/11CBF/Mak21 family protein, expressed
LOC_Os08g055901/11aquaporin NIP5.1, putative, expressed
LOC_Os03g520801/11Serine carboxypeptidase family protein, expressed
LOC_Os09g079001/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006508biological_processproteolysis
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0006810biological_processtransport
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0015250molecular_functionwater channel activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52150.1.S1_x_at--396--10871Chr04:27016770..27016794 (25 bp)
TTGGAGCTCATACTGACGTGCCAGC
LOC_Os04g45970
Os.52150.1.S1_x_at--130--7291Chr04:27016787..27016811 (25 bp)
GTGCCAGCTCCTGACATGGGAACTA
LOC_Os04g45970
Os.52150.1.S1_x_at--545--7611Chr04:27016804..27016902 (25 bp)
GGGAACTAATTCACAGACCATGGCT
LOC_Os04g45970
Os.52150.1.S1_x_at--680--5591Chr04:27016923..27016947 (25 bp)
GAAATTCCATGGTCATTCACCGGCA
LOC_Os04g45970
Os.52150.1.S1_x_at--49--8692Chr10:13741790..13742215 (25 bp)
TGTGATGTACGCTACTGAGGCTCTT
NONE
Os.52150.1.S1_x_at--1123--8871Chr04:27017114..27017138 (25 bp)
TGAGGCTCTTTTGGCTGAACATGGA
LOC_Os04g45970
Os.52150.1.S1_x_at--126--4311Chr04:27017158..27017182 (25 bp)
CCTTTGTTATCCAGGTCAGTCATAA
LOC_Os04g45970
Os.52150.1.S1_x_at--758--511Chr04:27017189..27017213 (25 bp)
ATCGATTGATTTTTGCTATGCGGAT
LOC_Os04g45970
Os.52150.1.S1_x_at--1063--2214Chr04:27017235..27017259 (25 bp)
ACAATACTCCATCCGTCCTAGAATA
LOC_Os04g45970
Os.52150.1.S1_x_at--1132--1529Chr11:7970492..7970842 (25 bp)
ATTTTGGGACAAATCCTGAGGGCTA
NONE
Os.52150.1.S1_x_at--621--4091Chr04:27017460..27017484 (25 bp)
CGAAGGGAGTAACATGCATCATCAT
LOC_Os04g45970
Target Sequence 
TTGGAGCTCATACTGACGTGCCAGCTCCTGACATGGGAACTAATTCACAGACCATGGCTTGGATTTTGGATGAGTACTCG
AAATTCCATGGTCATTCACCGGCAGTTGTCACTGGGAAGCCAATAGATCTTGGTGGATCATTAGGTAGAGATGCTGCTAC
AGGAAGAGGTGTGATGTACGCTACTGAGGCTCTTTTGGCTGAACATGGAAAGTCCATTTCTGGATCAACCTTTGTTATCC
AGGTCAGTCATAATTAATAATCGATTGATTTTTGCTATGCGGATTATTTCTAGGATGGTTGAAGGACAATACTCCATCCG
TCCTAGAATATAAGAAGTTTTAGGCTTGGACACGGTTATTAAGAAAGTAGGTAGAAGTGAGAGGTGGATGGTCATAATTG
GATGAGTAGTGGAGGTAGGTGGAAAAAGTGAATGGTGGAGTGCTGTTATTGGTTGGGAAGAGAATGTTGGTGGAGAAGTT
GTTATATTTTGGGACAAATCCTGAGGGCTAAAAGTTGTTATATTTTGGTACGAAGGGAGTAACATGCATCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52150.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis