Browse Element(s) Details


Os.27576.1.S1_at

Description gb:AK103331.1
DB_XREF= gi:32988540
TID=Os.27576.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125N17, full insert sequence.
FL= gb:AK103331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g460101/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27576.1.S1_at--453--10772Chr11:5761208..5761232 (25 bp)
TTGATAGCACTTCCCTTTGATGCAC
NONE
Os.27576.1.S1_at--211--10272Chr11:5761223..5761247 (25 bp)
TTTGATGCACATGTAGGCAGCTCTT
NONE
Os.27576.1.S1_at--1083--912Chr11:5761237..5761261 (25 bp)
AGGCAGCTCTTACCCTGAATTCATA
NONE
Os.27576.1.S1_at--757--7932Chr11:5761267..5761291 (25 bp)
GGATTAGCTGAACTCAGTGCCTCCA
NONE
Os.27576.1.S1_at--283--9992Chr11:5761271..5761294 (24 bp)
TAGCTGAACTCAGTGCCTCCAATGA
NONE
Os.27576.1.S1_at--627--2033Chr11:5761335..5761361 (25 bp)
ACTAGGGTAGTATTGTTTTGTGCTT
NONE
Os.27576.1.S1_at--332--10392Chr11:5761352..5761376 (25 bp)
TTTTGTGCTTGAGATCCTGGTTGCG
NONE
Os.27576.1.S1_at--663--6011Chr04:7853723..7853747 (25 bp)
GAGATCCTGGTTGCGGAACTGAGAT
NONE
Os.27576.1.S1_at--22--3951Chr04:7853710..7853734 (25 bp)
CGGAACTGAGATGTACTATTGACTT
NONE
Os.27576.1.S1_at--870--6091Chr04:7853685..7853709 (25 bp)
GAGTCATATTTAGTTTTTTGCTATA
NONE
Os.27576.1.S1_at--476--10452Chr11:5761440..5761464 (25 bp)
TTACTCATTTTTGCAGAACGAAGGA
NONE
Target Sequence 
TTGATAGCACTTCCCTTTGATGCACATGTAGGCAGCTCTTACCCTGAATTCATATAATTGGATTAGCTGAACTCAGTGCC
TCCAATGATGATTGAATAGGAAGGGAACTAACTAGGGTAGTATTGTTTTGTGCTTGAGATCCTGGTTGCGGAACTGAGAT
GTACTATTGACTTGAGTCATATTTAGTTTTTTGCTATATAATGTTGATTTTTTTACTCATTTTTGCAGAACGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis