Browse Element(s) Details


OsAffx.14288.1.S1_at

Description tigr:9632.m04433
TID=OsAffx.14288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4604011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed
LOC_Os04g46060Os.53641.1.S1_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46060OsAffx.26480.1.S1_s_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14288.1.S1_at--1156--7191Chr04:27052789..27052813 (25 bp)
GTCGTCGCCAAGTAACCGAGGACTA
LOC_Os04g46040
OsAffx.14288.1.S1_at--422--4011Chr04:27052791..27052815 (25 bp)
CGTCGCCAAGTAACCGAGGACTACT
LOC_Os04g46040
OsAffx.14288.1.S1_at--1127--7231Chr04:27052792..27052816 (25 bp)
GTCGCCAAGTAACCGAGGACTACTG
LOC_Os04g46040
OsAffx.14288.1.S1_at--889--4351Chr04:27052795..27052819 (25 bp)
GCCAAGTAACCGAGGACTACTGCCG
LOC_Os04g46040
OsAffx.14288.1.S1_at--1101--2831Chr04:27052797..27052821 (25 bp)
CAAGTAACCGAGGACTACTGCCGCC
LOC_Os04g46040
OsAffx.14288.1.S1_at--793--4171Chr04:27052818..27053032 (25 bp)
CGCCACAACACTCGCTATGGCTGTG
LOC_Os04g46040
OsAffx.14288.1.S1_at--756--3291Chr04:27052821..27053035 (25 bp)
CACAACACTCGCTATGGCTGTGGTG
LOC_Os04g46040
OsAffx.14288.1.S1_at--285--8351Chr04:27053026..27053050 (25 bp)
GGCTGTGGTGGTGGTAGCGTAGCTG
LOC_Os04g46040
OsAffx.14288.1.S1_at--937--9991Chr04:27053040..27053064 (25 bp)
TAGCGTAGCTGTGCATGAGGAAAGA
LOC_Os04g46040
OsAffx.14288.1.S1_at--252--3891Chr04:27053048..27053072 (25 bp)
CTGTGCATGAGGAAAGAGGTGACAA
LOC_Os04g46040
OsAffx.14288.1.S1_at--498--811Chr04:27053072..27053096 (25 bp)
ATGGGGACACATACATCGAGGCGAT
LOC_Os04g46040
Target Sequence 
GTCGTCGCCAAGTAACCGAGGACTACTGCCGCCACAACACTCGCTATGGCTGTGGTGGTGGTAGCGTAGCTGTGCATGAG
GAAAGAGGTGACAATGGGGACACATACATCGAGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis