Browse Element(s) Details


Os.53641.1.S1_at

Description gb:AK073695.1
DB_XREF= gi:32983718
TID=Os.53641.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063J05, full insert sequence.
FL= gb:AK073695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4606011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed
LOC_Os04g46060Os.53641.1.S1_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46060OsAffx.26480.1.S1_s_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53641.1.S1_at--841--9891Chr04:27065576..27065600 (25 bp)
TACTACAGGTGCACCCACAACAACT
LOC_Os04g46060
Os.53641.1.S1_at--207--9251Chr04:27065405..27065429 (25 bp)
TCCTTCTGACGAACGCATGCTTATG
LOC_Os04g46060
Os.53641.1.S1_at--971--611Chr04:27065389..27065413 (25 bp)
ATGCTTATGTACATGGATCGGTGAT
LOC_Os04g46060
Os.53641.1.S1_at--925--9431Chr04:27065372..27065396 (25 bp)
TCGGTGATGGATTATTGTTCTCTGA
LOC_Os04g46060
Os.53641.1.S1_at--691--8791Chr04:27065357..27065381 (25 bp)
TGTTCTCTGATCTGATGGTGGCAAT
LOC_Os04g46060
Os.53641.1.S1_at--762--4871Chr04:27065281..27065305 (25 bp)
GCTTTTAGAACTCTTATGGATGCTA
LOC_Os04g46060
Os.53641.1.S1_at--1112--6331Chr04:27065263..27065287 (25 bp)
GATGCTATTTAATTTCCTGGTCAAT
LOC_Os04g46060
Os.53641.1.S1_at--93--211Chr04:27065252..27065276 (25 bp)
ATTTCCTGGTCAATCAGCTAGCCGA
LOC_Os04g46060
Os.53641.1.S1_at--748--8591Chr04:27065246..27065270 (25 bp)
TGGTCAATCAGCTAGCCGATCGATC
LOC_Os04g46060
Os.53641.1.S1_at--886--9991Chr04:27065234..27065258 (25 bp)
TAGCCGATCGATCAACACGTTGCAT
LOC_Os04g46060
Os.53641.1.S1_at--215--2171Chr04:27065220..27065244 (25 bp)
ACACGTTGCATGATATTCAGTCTAA
LOC_Os04g46060
Target Sequence 
TACTACAGGTGCACCCACAACAACTGCCGCGTGAAGAAGCGGGTGGAGCGGCTGTCGGAGGATTGCCGCATGGTGATCAC
CACCTACGAGGGCCGCCACACCCACACCCCCTGCAGCGACGACGCCACCACCGGCGCCGCCGGCGACCACACCGCCAGCT
GCGCCTTCACCTCCTTCTGACGAACGCATGCTTATGTACATGGATCGGTGATGGATTATTGTTCTCTGATCTGATGGTGG
CAATTGGGAAATCGAAGAAGCAGGGATCGATGTAAAATGAAAATGTACTAGGAAAGCTTTTAGAACTCTTATGGATGCTA
TTTAATTTCCTGGTCAATCAGCTAGCCGATCGATCAACACGTTGCATGATATTCAGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis