Browse Element(s) Details


OsAffx.16572.4.S1_x_at

Description tigr:9633.m03702
TID=OsAffx.16572.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PREG-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3975011/11hypothetical protein
LOC_Os04g460002/11cyclin family protein, putative
LOC_Os11g183662/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39740OsAffx.22947.1.S1_x_at11/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.3.S1_x_at5/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.2.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.5.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39750OsAffx.16572.4.S1_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.4.S1_x_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.1.S1_x_at1/115+23265370..23265660hypothetical protein
LOC_Os05g39760Os.9908.1.S1_at11/115+23268719..23273322VHS domain containing protein, expressed
LOC_Os05g39770Os.15830.1.S1_at11/115+23272136..23276828Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16572.4.S1_x_at--730--4131Chr05:23265464..23265488 (25 bp)
CGCTCGGCATCGGTTTCGACCTGAA
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--208--4811Chr05:23265465..23265489 (25 bp)
GCTCGGCATCGGTTTCGACCTGAAC
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--194--3791Chr05:23265466..23265490 (25 bp)
CTCGGCATCGGTTTCGACCTGAACG
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--1009--8251Chr05:23265469..23265493 (25 bp)
GGCATCGGTTTCGACCTGAACGTGC
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--803--4971Chr05:23265470..23265494 (25 bp)
GCATCGGTTTCGACCTGAACGTGCC
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--486--3551Chr05:23265471..23265495 (25 bp)
CATCGGTTTCGACCTGAACGTGCCG
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--215--432Chr05:23265472..23265496 (25 bp)
ATCGGTTTCGACCTGAACGTGCCGC
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--774--5891Chr05:23265550..23265574 (25 bp)
GAGCTGGAGCCGACGCCTTCTCCTT
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--548--4691Chr05:23265586..23265610 (25 bp)
GCGGCAAGGTCGCATTGCTTCCTGT
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--122--7813Chr05:23265593..23265617 (25 bp)
GGTCGCATTGCTTCCTGTCCGAGGA
LOC_Os05g39750
OsAffx.16572.4.S1_x_at--328--10672Chr05:23265604..23265628 (25 bp)
TTCCTGTCCGAGGACGACACAAGCA
LOC_Os05g39750
Target Sequence 
CGCTCGGCATCGGTTTCGACCTGAACGTGCCGCCGGAGACGTTCGGCCACTACTGCGCCGTGCTCCAGTCCGAGATGCTC
TGCCTGGAGCTGGAGCCGACGCCTTCTCCTTTCCCTGCTCCGGCGGCAAGGTCGCATTGCTTCCTGTCCGAGGACGACAC
AAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16572.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis