Browse Element(s) Details


Os.9908.1.S1_at

Description gb:AK065069.1
DB_XREF= gi:32975087
TID=Os.9908.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K05, full insert sequence.
FL= gb:AK065069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3976011/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39740OsAffx.22947.1.S1_x_at11/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.3.S1_x_at5/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.2.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.5.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39750OsAffx.16572.4.S1_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.4.S1_x_at11/115+23265370..23265660hypothetical protein
LOC_Os05g39750OsAffx.16572.1.S1_x_at1/115+23265370..23265660hypothetical protein
LOC_Os05g39760Os.9908.1.S1_at11/115+23268719..23273322VHS domain containing protein, expressed
LOC_Os05g39770Os.15830.1.S1_at11/115+23272136..23276828Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os05g39780Os.38395.3.S1_x_at10/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.2.S1_x_at8/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.4.S1_x_at6/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.1.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39780Os.38395.5.S1_at1/115+23284794..23289032transposon protein, putative, Mutator sub-class
LOC_Os05g39790OsAffx.29842.1.S1_at11/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_x_at5/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_x_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.2.S1_at3/115+23291478..23294412transposon protein, putative, unclassified
LOC_Os05g39790OsAffx.29842.3.S1_at3/115+23291478..23294412transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9908.1.S1_at--921--7031Chr05:23272427..23272451 (25 bp)
GTACAACTCCTTTGTTTCTCAAACA
LOC_Os05g39760
Os.9908.1.S1_at--800--7251Chr05:23272459..23272483 (25 bp)
GTCCGGCAATGGCTCAAGATGTTAG
LOC_Os05g39760
Os.9908.1.S1_at--1031--9531Chr05:23272493..23272517 (25 bp)
TAATCCACGGCCATCAGAAACTACA
LOC_Os05g39760
Os.9908.1.S1_at--383--2571Chr05:23272607..23272631 (25 bp)
AACGGCGAGCATGCCTAGTCCAAAT
LOC_Os05g39760
Os.9908.1.S1_at--656--4391Chr05:23272639..23272663 (25 bp)
GCCAACCTTTGCTGGGTGGGAAGAA
LOC_Os05g39760
Os.9908.1.S1_at--1090--2691Chr05:23272680..23272704 (25 bp)
AAGCTAGCTACTACGGTTGTTCCAC
LOC_Os05g39760
Os.9908.1.S1_at--1118--6671Chr05:23272698..23272722 (25 bp)
GTTCCACACGTGTCTATATTTGCTG
LOC_Os05g39760
Os.9908.1.S1_at--809--9751Chr05:23272735..23272759 (25 bp)
TAAGGTTTCGCGTTGGTTACATTTG
LOC_Os05g39760
Os.9908.1.S1_at--780--6311Chr05:23272821..23272845 (25 bp)
GATGACATTCATCCGAGGGTGGCTT
LOC_Os05g39760
Os.9908.1.S1_at--319--7511Chr05:23272839..23272863 (25 bp)
GTGGCTTCTTGCTCGTTTAACTTCA
LOC_Os05g39760
Os.9908.1.S1_at--195--1411Chr05:23272911..23272935 (25 bp)
AGACATTCTCTCATATATTGCCAAG
LOC_Os05g39760
Target Sequence 
GTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCAT
CAGAAACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGANTTAT
GGTGGAGGCAAGATGAGTAGAACGGCGAGCATGCCTAGTCCAAATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATA
GTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCG
TTGGTTACATTTGNTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGA
CATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTGA
TGTNCAGACATTCTCTCATATATTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis