Browse Element(s) Details


Os.48725.1.S1_at

Description gb:AK066297.1
DB_XREF= gi:32976315
TID=Os.48725.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059A21, full insert sequence.
FL= gb:AK066297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4599011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48725.1.S1_at--1091--6031Chr04:27025566..27025590 (25 bp)
GAGTTGGTCAACATGGCCTTAGGTT
LOC_Os04g45990
Os.48725.1.S1_at--133--8411Chr04:27025552..27025576 (25 bp)
GGCCTTAGGTTTCGTTTGCAAGTCT
LOC_Os04g45990
Os.48725.1.S1_at--539--5471Chr04:27025497..27025521 (25 bp)
GAACTCTTGACTTCATACCATCTGG
LOC_Os04g45990
Os.48725.1.S1_at--1104--9971Chr04:27025482..27025506 (25 bp)
TACCATCTGGAAGCTTTGTATGTGA
LOC_Os04g45990
Os.48725.1.S1_at--359--3091Chr04:27025404..27025428 (25 bp)
AATACTTATTCGCTATTGGTCATAA
LOC_Os04g45990
Os.48725.1.S1_at--93--3691Chr04:27025363..27025387 (25 bp)
CTTTGGGAGGGCCTATCAAGATCCA
LOC_Os04g45990
Os.48725.1.S1_at--988--291Chr04:27025339..27025363 (25 bp)
ATACCCTCACTTCAGAAGGGTCCTG
LOC_Os04g45990
Os.48725.1.S1_at--459--2771Chr04:27025192..27025216 (25 bp)
AAGAGTGTACCTCACATTATGTTCT
LOC_Os04g45990
Os.48725.1.S1_at--416--3591Chr04:27025178..27025202 (25 bp)
CATTATGTTCTTTGCCTGTGAGGAC
LOC_Os04g45990
Os.48725.1.S1_at--827--4151Chr04:27025144..27025168 (25 bp)
CGCCAAGAACTTTCATACCACTACA
LOC_Os04g45990
Os.48725.1.S1_at--491--5531Chr04:27025073..27025097 (25 bp)
GAAAAAATGTCTCTGTGGCTCTATA
LOC_Os04g45990
Target Sequence 
GAGTTGGTCAACATGGCCTTAGGTTTCGTTTGCAAGTCTTCAAAACCAAATTGATGGGCTGGGGAGTAAGAACTCTTGAC
TTCATACCATCTGGAAGCTTTGTATGTGAATACATTGGAGAAGTGTTGGAGNATGAAGAGGCACAGAAAAGGNCGACCGA
TGAATACTTATTCGCTATTGGTCATAATTATTATGATGAAGCCCTTTGGGAGGGCCTATCAAGATCCATACCCTCACTTC
AGAAGGGTCCTGATAAAGATGAGGAAGCTNGCTTTGCTGTTGATGCTTCAAAGATGGGCAACTTTGCAAAATTCATCAAC
CATAGTTGNACCCCTAACCTTTATGCACAAAATGTCCTATATGATCATGACGACAAGAGTGTACCTCACATTATGTTCTT
TGCCTGTGAGGACATTCCACCCCGCCAAGAACTTTCATACCACTACAACTATACAATAGATCAGGTTCATGATGCCAATG
GTAACATCAAGAAGAAAAAATGTCTCTGTGGCTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis