Browse Element(s) Details


OsAffx.4103.1.S1_s_at

Description tigr:9632.m04421
TID=OsAffx.4103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4594011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4103.1.S1_s_at--417--8051Chr04:26991849..26991873 (25 bp)
GGAGATGGCACTCCGGCACCTCGAT
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--177--4051Chr04:26991870..26991894 (25 bp)
CGATTCGCAGCGGAGGCTCATGGAA
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--272--5811Chr04:26991904..26991928 (25 bp)
GACCGCATCATTGACTCCCTAGAGT
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--639--5711Chr04:26991916..26991940 (25 bp)
GACTCCCTAGAGTAAATCTCGGTGG
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--375--9511Chr04:26991932..26991956 (25 bp)
TCTCGGTGGCGCAAAGGTGTCTCCT
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--585--2871Chr04:26991945..26991969 (25 bp)
AAGGTGTCTCCTGTCAAGGTTTTCT
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--122--2911Chr04:26991960..26991984 (25 bp)
AAGGTTTTCTTGCTTGTCCTGATTG
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--538--1951Chr04:26991988..26992012 (25 bp)
ACTGGCTTGGCTTGCGAGTTTAGGA
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--1082--1951Chr04:26992036..26992060 (25 bp)
ACTGTGATGGATGTCTGATGTAGGC
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--334--8151Chr04:26992068..26992092 (25 bp)
GGAAATCGTAGTAACCTTTCTATCT
LOC_Os04g45940
OsAffx.4103.1.S1_s_at--1040--3671Chr04:26992083..26992107 (25 bp)
CTTTCTATCTATCTTGTATGGCGTA
LOC_Os04g45940
Target Sequence 
GGAGATGGCACTCCGGCACCTCGATTCGCAGCGGAGGCTCATGGAAGCGCTCGTCGACCGCATCATTGACTCCCTAGAGT
AAATCTCGGTGGCGCAAAGGTGTCTCCTGTCAAGGTTTTCTTGCTTGTCCTGATTGCCCACTGGCTTGGCTTGCGAGTTT
AGGAGTTAATTAGAGTTGTTCATATGTACTGTGATGGATGTCTGATGTAGGCGTAGCTTGGAAATCGTAGTAACCTTTCT
ATCTATCTTGTATGGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4103.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis