Browse Element(s) Details


Os.8071.1.S1_at

Description gb:AK068610.1
DB_XREF= gi:32978627
TID=Os.8071.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31120 putative serine protease-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full insert sequence.
FL= gb:AK068610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4591011/11Placental protein 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8071.1.S1_at--25--1691Chr04:26975125..26975149 (25 bp)
ACCAAGGTTACATATTCCCAAGGAG
LOC_Os04g45910
Os.8071.1.S1_at--67--8971Chr04:26975300..26975324 (25 bp)
TGAAATCGGTATCCAGCACTCTGAT
LOC_Os04g45910
Os.8071.1.S1_at--1158--5091Chr04:26975315..26975339 (25 bp)
GCACTCTGATTGGTGTCAGCCCTGA
LOC_Os04g45910
Os.8071.1.S1_at--117--1211Chr04:26975339..26975363 (25 bp)
AGTTTGAGGTTGCACTCTACACGCT
LOC_Os04g45910
Os.8071.1.S1_at--919--9851Chr04:26975356..26975380 (25 bp)
TACACGCTCTGCTTCTTTATGGGAG
LOC_Os04g45910
Os.8071.1.S1_at--724--311Chr04:26975387..26975411 (25 bp)
ATAACCGCGTTGAGATTGGCCCGTA
LOC_Os04g45910
Os.8071.1.S1_at--315--8631Chr04:26975454..26975478 (25 bp)
TGGGTCAGCATTTCCAATTGCAGAT
LOC_Os04g45910
Os.8071.1.S1_at--299--351Chr04:26975477..26975501 (25 bp)
ATAACTGAATTCGTTCCATGCCTGC
LOC_Os04g45910
Os.8071.1.S1_at--791--9091Chr04:26975499..26975523 (25 bp)
TGCTCCTGCGTGTATGTGATTCCTT
LOC_Os04g45910
Os.8071.1.S1_at--541--91Chr04:26975517..26975541 (25 bp)
ATTCCTTCAGCTTTCAGTTTCACGA
LOC_Os04g45910
Os.8071.1.S1_at--548--151Chr04:26975546..26975570 (25 bp)
ATTAGTGTGCTGTTCGATTTGGTCG
LOC_Os04g45910
Target Sequence 
ACCAAGGTTACATATTCCCAAGGAGGCGTGGGGAATCGCCTGATTCAGAGACACAGCTATTGACTATTCAGTTTGAGTGG
CACGGTGTTCTGAAATCGGTATCCAGCACTCTGATTGGTGTCAGCCCTGAGTTTGAGGTTGCACTCTACACGCTCTGCTT
CTTTATGGGAGGGGAAGATAACCGCGTTGAGATTGGCCCGTACGGAGTAAACATCAAGTGCTACCGAATGGGAAACAGCA
AAATTGGGTCAGCATTTCCAATTGCAGATAACTGAATTCGTTCCATGCCTGCTCCTGCGTGTATGTGATTCCTTCAGCTT
TCAGTTTCACGAAGTTATTAGTGTGCTGTTCGATTTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis