Browse Element(s) Details


Os.5872.1.S1_at

Description gb:AK102135.1
DB_XREF= gi:32987344
TID=Os.5872.1
CNT=141
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085H02, full insert sequence.
FL= gb:AK102135.1 gb:AK101961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4593011/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5872.1.S1_at--74--8271Chr04:26984651..26984675 (25 bp)
GGCAGATCTGTCTCTGGTCATGATC
LOC_Os04g45930
Os.5872.1.S1_at--796--7811Chr04:26984666..26984690 (25 bp)
GGTCATGATCCAGTGTACAGTAGTG
LOC_Os04g45930
Os.5872.1.S1_at--214--8751Chr04:26984679..26984703 (25 bp)
TGTACAGTAGTGGTCGGCATGGCAT
LOC_Os04g45930
Os.5872.1.S1_at--724--8551Chr04:26984816..26984837 (22 bp)
TGGAGGTTCCGCAAGCAGTAATGAT
LOC_Os04g45930
Os.5872.1.S1_at--577--611Chr04:26984836..26984860 (25 bp)
ATGCTGGTGGAATGTACTCATCAAA
LOC_Os04g45930
Os.5872.1.S1_at--1119--3551Chr04:26984854..26984878 (25 bp)
CATCAAATTTCAGTGGTAGCTACAT
LOC_Os04g45930
Os.5872.1.S1_at--1112--6951Chr04:26984869..26984893 (25 bp)
GTAGCTACATGTCTCGTGGGTCTGA
LOC_Os04g45930
Os.5872.1.S1_at--463--9691Chr04:26985028..26985052 (25 bp)
TCACTTTACTCAGGGCGTAATGTAG
LOC_Os04g45930
Os.5872.1.S1_at--815--7151Chr04:26985325..26985349 (25 bp)
GTCTATGGAACACACATGGCACCGT
LOC_Os04g45930
Os.5872.1.S1_at--769--8511Chr04:26985419..26985443 (25 bp)
TGGCAATTGTGTGTGGTGCTCCTGA
LOC_Os04g45930
Os.5872.1.S1_at--972--3611Chr04:26985495..26985519 (25 bp)
CTTGTGGATGTTCTGGCTAGTTTCT
LOC_Os04g45930
Target Sequence 
GGCAGATCTGTCTCTGGTCATGATCCAGTGTACAGTAGTGGTCGGCATGGCATGAGTTATGGAGGTTCCGCAAGCAGTAA
TGATGCTGGTGGAATGTACTCATCAAATTTCAGTGGTAGCTACATGTCTCGTGGGTCTGATGTTGGTGGAAGTTCATATT
CATCACTTTACTCAGGGCGTAATGTAGGTAGCAGCAGTGGCTACTATGGCGGTAGTGGTTCTAGTTCATATTACTGAGAT
TTTGCATCNTATCGTCTATGGAACACACATGGCACCGTAGGAGGTTGGTGTAGGCCCCGGATTGTATGGAGCTCCTTAAT
TTAAGGCCTACGGACCTGGACAAGAAGTGGCAATTGTGTGTGGTGCTCCTGANTTAGACATGATCAAAGAAGTCAGAAAC
ACCAAGTTGGTTAAAGCAATAGTCTTGTGGATGTTCTGGCTAGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis