Browse Element(s) Details


Os.10024.1.S1_at

Description gb:AK070304.1
DB_XREF= gi:32980328
TID=Os.10024.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049B02, full insert sequence.
FL= gb:AY512582.1 gb:AK070304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4590011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein
LOC_Os04g45880NANA4+26944554..26944769hypothetical protein
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10024.1.S1_at--969--5071Chr04:26965330..26965354 (25 bp)
GCAGCCTCGTGGTGTTCCTCTGGCA
LOC_Os04g45900
Os.10024.1.S1_at--912--9251Chr04:26965315..26965339 (25 bp)
TCCTCTGGCACAGGTTCGACGGCAA
LOC_Os04g45900
Os.10024.1.S1_at--744--7851Chr04:26965237..26965261 (25 bp)
GGATTTGGACGTTCCCTTCGTCGCT
LOC_Os04g45900
Os.10024.1.S1_at--224--6731Chr04:26965173..26965197 (25 bp)
GTTCATACCGGGAAACTAGCCAATG
LOC_Os04g45900
Os.10024.1.S1_at--703--3711Chr04:26965158..26965182 (25 bp)
CTAGCCAATGCATCGCTGTAATTTA
LOC_Os04g45900
Os.10024.1.S1_at--278--3871Chr04:26965143..26965167 (25 bp)
CTGTAATTTACAGCGTCAATGCAGA
LOC_Os04g45900
Os.10024.1.S1_at--656--6891Chr04:26965085..26965109 (25 bp)
GTATAGCGTCAATGCAGAAACACTA
LOC_Os04g45900
Os.10024.1.S1_at--100--511Chr04:26965052..26965076 (25 bp)
ATCGTGTATCGAGCGTTTTGGACTT
LOC_Os04g45900
Os.10024.1.S1_at--702--9371Chr04:26965044..26965068 (25 bp)
TCGAGCGTTTTGGACTTAGATTTAA
LOC_Os04g45900
Os.10024.1.S1_at--702--6531Chr04:26965026..26965050 (25 bp)
GATTTAAGATTTAGGCGCAGCGAGA
LOC_Os04g45900
Os.10024.1.S1_at--239--1431Chr04:26964998..26965022 (25 bp)
AGAACGGGTGTAGCTATGACGGATA
LOC_Os04g45900
Target Sequence 
GCAGCCTCGTGGTGTTCCTCTGGCACAGGTTCGACGGCAAGAGGGCCGCGCTGCTCGTGCCGGCCGTCGCGTCCGGCCTC
ATCTGCGGCGACGGGATTTGGACGTTCCCTTCGTCGCTGCTCGCGCTGGCCAAGGTCAAGCCACCCATCTGCATGAAGTT
CATACCGGGAAACTAGCCAATGCATCGCTGTAATTTACAGCGTCAATGCAGACGTATAGATCGTAAAAAAAGAGATCGTA
TAGACGTATAGCGTCAATGCAGAAACACTAGAAAAGAGATCGTGTATCGAGCGTTTTGGACTTAGATTTAAGATTTAGGC
GCAGCGAGAGGAAGAACGGGTGTAGCTATGACGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis