Browse Element(s) Details


OsAffx.26476.2.S1_x_at

Description tigr:9632.m04415
TID=OsAffx.26476.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4589011/11Zinc knuckle family protein
LOC_Os01g404604/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45860Os.49765.1.S1_at11/114+26935253..26939713transposon protein, putative, unclassified, expressed
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein
LOC_Os04g45880NANA4+26944554..26944769hypothetical protein
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26476.2.S1_x_at--375--2631Chr04:26953559..26953583 (25 bp)
AAGAACACACTTGACGAAATCCTAA
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--692--2871Chr04:26953511..26953535 (25 bp)
AAGTGTGGACTTGGCTTTCATCGCA
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--538--9792Chr04:26953401..26953425 (25 bp)
TAAGAACCATCCTCACATTACATGT
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--514--671Chr04:26953366..26953390 (25 bp)
ATGAGAAGGGACACTTTGCCTCCGT
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--487--3811Chr04:26953347..26953371 (25 bp)
CTCCGTGTGCGCAAACATGAAGGAT
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--701--2372Chr04:28755597..28755617 (21 bp)
AAACCTAACTTGCTACAATTGCCGC
NONE
OsAffx.26476.2.S1_x_at--81--1032Chr04:26953197..26953221 (25 bp)
AGGTAATACTCCTAAGCCTAATATT
LOC_Os04g45890
OsAffx.26476.2.S1_x_at--390--6612Chr04:28755736..28755760 (25 bp)
GTTGGTTTACCTAGACTTGCACCTA
NONE
OsAffx.26476.2.S1_x_at--689--5672Chr04:28755749..28755773 (25 bp)
GACTTGCACCTAGAAGGAGGACCAT
NONE
OsAffx.26476.2.S1_x_at--1055--933Chr04:28755766..28756150 (25 bp)
AGGACCATTTGGGTGCCTCGTATTT
NONE
OsAffx.26476.2.S1_x_at--96--7252Chr04:26953073..26953097 (25 bp)
GTGCCTCGTATTTTGGTAACTAACA
LOC_Os04g45890
Target Sequence 
AAGAACACACTTGACGAAATCCTAAGCAAGCAAAAGAGCACAAATGACAAGTGTGGACTTGGCTTTCATCGCAAGGAGAA
TGCTAAGAAGACAAGACACATGCCTAGATATGCAAGGAAGCATGCATACTTAAGAAATGATGGAAAGAAAAATGTGAGTA
AGAACCATCCTCACATTACATGTTTTGGTTGTCATGAGAAGGGACACTTTGCCTCCGTGTGCGCAAACATGAAGGATGAG
AAGTGCAACTTCAAATTGAGGCAAACCGGCAAGAAGCAAGACAAAACGACAAGTCATAGAGGTCAAAACCTAACTTGCTA
CAATTGCCGCAAAAAGGGACATATTGGTAAAAATTGTCCCATAGGTAATACTCCTAAGCCTAATATTATTTTTGATGATT
ATGTGCTTAGGAAAAATAGGCAAGGCAATGTGTTTGCTAGATATGTTGGTTTACCTAGACTTGCACCTAGAAGGAGGACC
ATTTGGGTGCCTCGTATTTTGGTAACTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26476.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis