Browse Element(s) Details


OsAffx.31753.4.S1_s_at

Description tigr:9640.m01501
TID=OsAffx.31753.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4585011/11hAT family dimerisation domain containing protein
LOC_Os12g1544011/11AC transposase, putative
LOC_Os01g5883011/11hAT family dimerisation domain containing protein
LOC_Os06g2453011/11hAT family dimerisation domain containing protein
LOC_Os08g256602/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45860Os.49765.1.S1_at11/114+26935253..26939713transposon protein, putative, unclassified, expressed
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein
LOC_Os04g45880NANA4+26944554..26944769hypothetical protein
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31753.4.S1_s_at--770--10436Chr07:22622221..22622245 (25 bp)
TTAGACAATGCTAGTAACAACACCG
NONE
OsAffx.31753.4.S1_s_at--757--4916Chr07:22622248..22622272 (25 bp)
GCTTGTCAAGAATTAGTGAAAACTC
NONE
OsAffx.31753.4.S1_s_at--349--6034Chr06:14381441..14381465 (25 bp)
GAGATCCTAAAGTACATTGAGCATT
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--800--1174Chr06:14381451..14381475 (25 bp)
AGTACATTGAGCATTCACCCTCACG
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--524--8914Chr06:14381458..14381482 (25 bp)
TGAGCATTCACCCTCACGCATTCAA
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--774--1794Chr06:14381467..14381491 (25 bp)
ACCCTCACGCATTCAAGCGTTTAAT
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--1043--1634Chr06:14381482..14381506 (25 bp)
AGCGTTTAATTCAATTGCTTCTAGT
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--13--9074Chr06:14381497..14381521 (25 bp)
TGCTTCTAGTAAAAGTCTTCCTCCA
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--579--10854Chr06:14381554..14381578 (25 bp)
TTGGAACTCGACCTTCAAGATGATT
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--513--5474Chr06:14381557..14381581 (25 bp)
GAACTCGACCTTCAAGATGATTAGA
LOC_Os06g24530
OsAffx.31753.4.S1_s_at--345--9374Chr06:14381561..14381585 (25 bp)
TCGACCTTCAAGATGATTAGAGAAA
LOC_Os06g24530
Target Sequence 
TTAGACAATGCTAGTAACAACACCGTTGCTTGTCAAGAATTAGTGAAAACTCTTAAGGATGAGTTGGTTTTGGAAGATGG
AATGAGGGTGATTCATGTGGCAATAGATAAGATCCGTGAGATCCTAAAGTACATTGAGCATTCACCCTCACGCATTCAAG
CGTTTAATTCAATTGCTTCTAGTAAAAGTCTTCCTCCAAAATCTGGTTTCGCTCTTGATGTACCAACCCATTGGAACTCG
ACCTTCAAGATGATTAGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31753.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis