Browse Element(s) Details


OsAffx.14285.1.S1_at

Description tigr:9632.m04408
TID=OsAffx.14285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45860Os.49765.1.S1_at11/114+26935253..26939713transposon protein, putative, unclassified, expressed
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14285.1.S1_at--526--7031Chr04:26916863..26916887 (25 bp)
GTAAAGGCGCTTATCATTTTGGTTT
LOC_Os04g45820
OsAffx.14285.1.S1_at--474--8391Chr04:26916858..26916882 (25 bp)
GGCGCTTATCATTTTGGTTTTGCAA
LOC_Os04g45820
OsAffx.14285.1.S1_at--296--2451Chr04:26916818..26916842 (25 bp)
AACACTGAACAGAACGACAAAGACT
LOC_Os04g45820
OsAffx.14285.1.S1_at--895--5611Chr04:26916662..26916827 (25 bp)
GACAAAGACTGGCAAGGGCACTACG
LOC_Os04g45820
OsAffx.14285.1.S1_at--844--1071Chr04:26916648..26916672 (25 bp)
AGGGCACTACGCAAGTATCTGCAAG
LOC_Os04g45820
OsAffx.14285.1.S1_at--1133--6891Chr04:26916634..26916658 (25 bp)
GTATCTGCAAGGAACCAAACTATGA
LOC_Os04g45820
OsAffx.14285.1.S1_at--382--2531Chr04:26916617..26916641 (25 bp)
AACTATGAACGTACCACCGAGGCAT
LOC_Os04g45820
OsAffx.14285.1.S1_at--714--9551Chr04:26916614..26916638 (25 bp)
TATGAACGTACCACCGAGGCATCTC
LOC_Os04g45820
OsAffx.14285.1.S1_at--149--6211Chr04:26916599..26916623 (25 bp)
GAGGCATCTCATATACTCTCCACTA
LOC_Os04g45820
OsAffx.14285.1.S1_at--470--231Chr04:26916589..26916613 (25 bp)
ATATACTCTCCACTAGTAGGACTAG
LOC_Os04g45820
OsAffx.14285.1.S1_at--709--1271Chr04:26916555..26916579 (25 bp)
AGATAAGAGTAGTACACTATCGGCA
LOC_Os04g45820
Target Sequence 
GTAAAGGCGCTTATCATTTTGGTTTTGCAAAGATGGGGATTGGTGAACACTGAACAGAACGACAAAGACTGGCAAGGGCA
CTACGCAAGTATCTGCAAGGAACCAAACTATGAACGTACCACCGAGGCATCTCATATACTCTCCACTAGTAGGACTAGTA
AAACTGAAGATAAGAGTAGTACACTATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis