Browse Element(s) Details


Os.49287.1.S1_x_at

Description gb:AK106878.1
DB_XREF= gi:32992087
TID=Os.49287.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E05, full insert sequence.
FL= gb:AK106878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4583411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45860Os.49765.1.S1_at11/114+26935253..26939713transposon protein, putative, unclassified, expressed
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein
LOC_Os04g45880NANA4+26944554..26944769hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49287.1.S1_x_at--1020--1271Chr04:26924674..26924809 (25 bp)
AGATCAGATTGAGGGACTTGCTCTT
LOC_Os04g45834
Os.49287.1.S1_x_at--401--4232Chr04:26924943..26924967 (25 bp)
CCGAACTATGGTTTTGTGTATGCCT
LOC_Os04g45834
Os.49287.1.S1_x_at--240--2531Chr04:26924946..26924970 (25 bp)
AACTATGGTTTTGTGTATGCCTAGG
LOC_Os04g45834
Os.49287.1.S1_x_at--152--2032Chr04:26924947..26924971 (25 bp)
ACTATGGTTTTGTGTATGCCTAGGA
LOC_Os04g45834
Os.49287.1.S1_x_at--847--3691Chr04:26924948..26924972 (25 bp)
CTATGGTTTTGTGTATGCCTAGGAC
LOC_Os04g45834
Os.49287.1.S1_x_at--1100--10091Chr04:26924949..26924973 (25 bp)
TATGGTTTTGTGTATGCCTAGGACA
LOC_Os04g45834
Os.49287.1.S1_x_at--877--8571Chr04:26924951..26924975 (25 bp)
TGGTTTTGTGTATGCCTAGGACAAC
LOC_Os04g45834
Os.49287.1.S1_x_at--925--7431Chr04:26924958..26924982 (25 bp)
GTGTATGCCTAGGACAACATGTGTT
LOC_Os04g45834
Os.49287.1.S1_x_at--971--10131Chr04:26924961..26924985 (25 bp)
TATGCCTAGGACAACATGTGTTGCT
LOC_Os04g45834
Os.49287.1.S1_x_at--789--4451Chr04:26924964..26924988 (25 bp)
GCCTAGGACAACATGTGTTGCTACT
LOC_Os04g45834
Os.49287.1.S1_x_at--714--951Chr04:26924968..26924992 (25 bp)
AGGACAACATGTGTTGCTACTGCAA
LOC_Os04g45834
Target Sequence 
AGATCAGATTGAGGGACTTGCTCTTGTTTGAAGACATGAATGTATGGACATGCACTGTTCTTGCAATGATTTTGGATGTT
TGTAACCCCTGTTATGTGTCATGATAAACTTGTAAAACCATGGCAATGCTTTTGGATATTTGGCACAAAAGACCTACTCC
GAACTATGGTTTTGTGTATGCCTAGGACAACATGTGTTGCTACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49287.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis