Browse Element(s) Details


Os.12134.1.S1_at

Description gb:AK109177.1
DB_XREF= gi:32994386
TID=Os.12134.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H12, full insert sequence.
FL= gb:AK109177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4581011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45790OsAffx.14284.1.S1_at11/114+26889629..26889967hypothetical protein
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12134.1.S1_at--230--6091Chr04:26905915..26905939 (25 bp)
GAGTCGGATCAGTGCGACGACCAGC
LOC_Os04g45810
Os.12134.1.S1_at--406--4091Chr04:26905929..26905953 (25 bp)
CGACGACCAGCTTGACTACGATGAG
LOC_Os04g45810
Os.12134.1.S1_at--108--9931Chr04:26905945..26905969 (25 bp)
TACGATGAGGGCTTGTTCCCGGAGT
LOC_Os04g45810
Os.12134.1.S1_at--469--1691Chr04:26905997..26906021 (25 bp)
AGCCATGGCCGCTCGTCGAGTGGAA
LOC_Os04g45810
Os.12134.1.S1_at--830--6011Chr04:26906041..26906065 (25 bp)
GAGAGTAGTATATTACCCTAGGTTA
LOC_Os04g45810
Os.12134.1.S1_at--905--1791Chr04:26906055..26906079 (25 bp)
ACCCTAGGTTAATTTGTGTGTACAT
LOC_Os04g45810
Os.12134.1.S1_at--45--2851Chr04:26906088..26906112 (25 bp)
AAGTACGTGGATCACGTCTCCTCGA
LOC_Os04g45810
Os.12134.1.S1_at--553--9491Chr04:26906117..26906141 (25 bp)
TCTGCCGTCTCCCTTGGACAGAGAG
LOC_Os04g45810
Os.12134.1.S1_at--257--5531Chr04:26906284..26906308 (25 bp)
GAAAACTAGATCGAGCTCATTGGAA
LOC_Os04g45810
Os.12134.1.S1_at--777--5211Chr04:26906320..26906344 (25 bp)
GAATTCAAGCATCTTTTGTGGTCAC
LOC_Os04g45810
Os.12134.1.S1_at--879--10371Chr04:26906333..26906357 (25 bp)
TTTTGTGGTCACTTCGAATTCGGAT
LOC_Os04g45810
Target Sequence 
GAGTCGGATCAGTGCGACGACCAGCTTGACTACGATGAGGGCTTGTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTG
GGAGCCATGGCCGCTCGTCGAGTGGAATGCGGTGGCTTGAAAGACAGAGAGTAGTATATTACCCTAGGTTAATTTGTGTG
TACATGTAGCTTAAAGTACGTGGATCACGTCTCCTCGACTGATCTGCCGTCTCCCTTGGACAGAGAGGGAAAAGAGGGCC
GTGGCAATGACGTGTGGGGCCGGTTTGTAGATTGGGGTTGCAAGAGGAATCTCGTTGGAGTAGTGGTGGTGGAAACCTTG
GAAGCAATTAAGCCAATGGACTTTGTGTTTTGGATGGTGCTAAAATGGAGAAAACTAGATCGAGCTCATTGGAAGAGTTG
CATAGGAATTCAAGCATCTTTTGTGGTCACTTCGAATTCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis