Browse Element(s) Details


OsAffx.14284.1.S1_at

Description tigr:9632.m04405
TID=OsAffx.14284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4579011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45770NANA4+26868800..26871760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45780OsAffx.14870.2.S1_at11/114+26873740..26877595hypothetical protein
LOC_Os04g45790OsAffx.14284.1.S1_at11/114+26889629..26889967hypothetical protein
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14284.1.S1_at--450--1071Chr04:26889837..26889861 (25 bp)
AGGGATCCAGTGGTCGCGACATCGT
LOC_Os04g45790
OsAffx.14284.1.S1_at--963--7651Chr04:26889836..26889860 (25 bp)
GGGATCCAGTGGTCGCGACATCGTC
LOC_Os04g45790
OsAffx.14284.1.S1_at--734--6251Chr04:26889796..26889820 (25 bp)
GATGGTGAGGAGGACTACCCTGACA
LOC_Os04g45790
OsAffx.14284.1.S1_at--246--8892Chr05:15410550..15410658 (24 bp)
TGAGGAGGACTACCCTGACAACCTT
NONE
OsAffx.14284.1.S1_at--41--991Chr04:26889789..26889813 (25 bp)
AGGAGGACTACCCTGACAACCTTGA
LOC_Os04g45790
OsAffx.14284.1.S1_at--996--951Chr04:26889786..26889810 (25 bp)
AGGACTACCCTGACAACCTTGACCT
LOC_Os04g45790
OsAffx.14284.1.S1_at--863--9951Chr04:26889781..26889805 (25 bp)
TACCCTGACAACCTTGACCTTGACA
LOC_Os04g45790
OsAffx.14284.1.S1_at--1055--4291Chr04:26889770..26889794 (25 bp)
CCTTGACCTTGACATACTCGTCGAC
LOC_Os04g45790
OsAffx.14284.1.S1_at--929--3531Chr04:26889758..26889782 (25 bp)
CATACTCGTCGACTGCGAAGTCGGC
LOC_Os04g45790
OsAffx.14284.1.S1_at--733--9411Chr04:26889753..26889777 (25 bp)
TCGTCGACTGCGAAGTCGGCCCTAT
LOC_Os04g45790
OsAffx.14284.1.S1_at--1036--1771Chr04:26889682..26889706 (25 bp)
ACCGGTGGGCACCAGGACCTCTACA
LOC_Os04g45790
Target Sequence 
AGGGATCCAGTGGTCGCGACATCGTCGTCCCCGGCAACCACGATGGTGAGGAGGACTACCCTGACAACCTTGACCTTGAC
ATACTCGTCGACTGCGAAGTCGGCCCTATCCCCGGTGGCCACCTCAACGCTGATGCCGCCGTCTTTGTCCCCACCACCGG
TGGGCACCAGGACCTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis