Browse Element(s) Details


OsAffx.14870.2.S1_at

Description tigr:9632.m04404
TID=OsAffx.14870.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4578011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45740OsAffx.26475.1.S1_at11/114+26847599..26848832hypothetical protein
LOC_Os04g45750Os.14289.1.S1_at11/114+26858283..26861210expressed protein
LOC_Os04g45750OsAffx.2477.1.S1_x_at1/114+26858283..26861210expressed protein
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45770NANA4+26868800..26871760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45780OsAffx.14870.2.S1_at11/114+26873740..26877595hypothetical protein
LOC_Os04g45790OsAffx.14284.1.S1_at11/114+26889629..26889967hypothetical protein
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14870.2.S1_at--1083--5851Chr04:26874311..26874335 (25 bp)
GAGCCATTTCTGCAGATAAGCTTAA
LOC_Os04g45780
OsAffx.14870.2.S1_at--17--4911Chr04:26874292..26874316 (25 bp)
GCTTAAGGAGCAACTTGCTGCTTCA
LOC_Os04g45780
OsAffx.14870.2.S1_at--50--5371Chr04:26874225..26874249 (25 bp)
GAAGAGAAGAATTCCTCCCTCTTGA
LOC_Os04g45780
OsAffx.14870.2.S1_at--160--1671Chr04:26874117..26874141 (25 bp)
AGCCTTCCGGCCGACAATAGTACAT
LOC_Os04g45780
OsAffx.14870.2.S1_at--288--3111Chr04:26874102..26874126 (25 bp)
AATAGTACATTGTCTGTTCTTGCCA
LOC_Os04g45780
OsAffx.14870.2.S1_at--223--51Chr04:26874094..26874118 (25 bp)
ATTGTCTGTTCTTGCCAATTGGGTC
LOC_Os04g45780
OsAffx.14870.2.S1_at--781--5371Chr04:26874069..26874093 (25 bp)
GAAGAATCATCGACTGGTTTGGTTG
LOC_Os04g45780
OsAffx.14870.2.S1_at--724--7911Chr04:26874049..26874073 (25 bp)
GGTTGATGGTATTGAGCCCTTCGCC
LOC_Os04g45780
OsAffx.14870.2.S1_at--147--2911Chr04:26873946..26873970 (25 bp)
AAGGAATCCATCACCGACTTACTTG
LOC_Os04g45780
OsAffx.14870.2.S1_at--842--2451Chr04:26873900..26873924 (25 bp)
AACACCGTGCGGCAATTCGATCTGT
LOC_Os04g45780
OsAffx.14870.2.S1_at--550--9511Chr04:26873815..26873839 (25 bp)
TCTCTGGGCATCGTTGGCTTCGAGC
LOC_Os04g45780
Target Sequence 
GAGCCATTTCTGCAGATAAGCTTAAGGAGCAACTTGCTGCTTCAGAAAAAGAGAACAAGCAGCTCGAACTGGCTCGTCTG
AACCAAGAAGAGAAGAATTCCTCCCTCTTGAAAGAACTCGAAGATTGCCGTTCGAAGCTTTTGGAGAGTTGCAAGATGGT
TCAAGACGCTGTGCAAAAACTTGGAGCTAATGTAAGCCTTCCGGCCGACAATAGTACATTGTCTGTTCTTGCCAATTGGG
TCGAAGAATCATCGACTGGTTTGGTTGATGGTATTGAGCCCTTCGCCTCTCGTTGTTCAAAGATCTCCGCCGAGGCTTTA
TCGGCTAGTCTTCTTTCGAACGGATGTGACCATTTCTCTGGTTTAAAGGAATCCATCACCGACTTACTTGGCGATGAGTC
AAAATTTGCTCAACACCGTGCGGCAATTCGATCTGTCGTCAAAGCTTTTCAAGTTTGGTATTGGAAAAATAGAGGCTATG
AAGATACCCTTGCTTCTCTCTGGGCATCGTTGGCTTCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14870.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis