Browse Element(s) Details


OsAffx.26475.1.S1_at

Description tigr:9632.m04400
TID=OsAffx.26475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4574011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed
LOC_Os04g45740OsAffx.26475.1.S1_at11/114+26847599..26848832hypothetical protein
LOC_Os04g45750Os.14289.1.S1_at11/114+26858283..26861210expressed protein
LOC_Os04g45750OsAffx.2477.1.S1_x_at1/114+26858283..26861210expressed protein
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45770NANA4+26868800..26871760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45780OsAffx.14870.2.S1_at11/114+26873740..26877595hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26475.1.S1_at--287--8671Chr04:26848781..26848801 (21 bp)
TGTGGTCTGAGCCTGCCTCAGTACC
LOC_Os04g45740
OsAffx.26475.1.S1_at--471--6991Chr04:26847922..26847946 (25 bp)
GTACCCACACTTACTGCGAGGCCAA
LOC_Os04g45740
OsAffx.26475.1.S1_at--712--9131Chr04:26847908..26847932 (25 bp)
TGCGAGGCCAACCAACCATGATGGT
LOC_Os04g45740
OsAffx.26475.1.S1_at--639--3431Chr04:26847882..26847906 (25 bp)
CAGATGCTGGGTGTTATGTGGCTCA
LOC_Os04g45740
OsAffx.26475.1.S1_at--603--791Chr04:26847867..26847891 (25 bp)
ATGTGGCTCAACGTCCAACGAGAAG
LOC_Os04g45740
OsAffx.26475.1.S1_at--56--1871Chr04:26847850..26847874 (25 bp)
ACGAGAAGGAATGGGCTACCACGAC
LOC_Os04g45740
OsAffx.26475.1.S1_at--32--10071Chr04:26847813..26847837 (25 bp)
TAGTCGGCCCTCAGTTCGCTATGGA
LOC_Os04g45740
OsAffx.26475.1.S1_at--555--1231Chr04:26847801..26847825 (25 bp)
AGTTCGCTATGGACACGCTGTCGTC
LOC_Os04g45740
OsAffx.26475.1.S1_at--973--10631Chr04:26847769..26847793 (25 bp)
TTCCTCGCCATTCGGCGAGGGTTGT
LOC_Os04g45740
OsAffx.26475.1.S1_at--409--7011Chr04:26847707..26847731 (25 bp)
GTACTACAATGAGCGGGAGAGGTTT
LOC_Os04g45740
OsAffx.26475.1.S1_at--1140--6211Chr04:26847670..26847694 (25 bp)
GAGGCGCTGGCCACGTTGCAGCTCA
LOC_Os04g45740
Target Sequence 
TGTGGTCTGAGCCTGCCTCAGTACCCACACTTACTGCGAGGCCAACCAACCATGATGGTGCAGATGCTGGGTGTTATGTG
GCTCAACGTCCAACGAGAAGGAATGGGCTACCACGACAGGGGTGGGGTGTAGTCGGCCCTCAGTTCGCTATGGACACGCT
GTCGTCGGTGTCCTTCCTCGCCATTCGGCGAGGGTTGTGGGAGTGGGGTAGAGGTGGGCAGCCACAATGGCTGGTGTACT
ACAATGAGCGGGAGAGGTTTAGGATGGACTTGGAGGCGCTGGCCACGTTGCAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis