Browse Element(s) Details


Os.6187.1.S1_at

Description gb:AK121106.1
DB_XREF= gi:37990729
TID=Os.6187.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072I23, full insert sequence.
FL= gb:AK121106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4580011/11sphingosine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45770NANA4+26868800..26871760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45780OsAffx.14870.2.S1_at11/114+26873740..26877595hypothetical protein
LOC_Os04g45790OsAffx.14284.1.S1_at11/114+26889629..26889967hypothetical protein
LOC_Os04g45800Os.6187.1.S1_at11/114+26892116..26899379sphingosine kinase, putative, expressed
LOC_Os04g45810Os.12134.1.S1_at11/114+26905091..26906418Homeobox domain containing protein, expressed
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6187.1.S1_at--202--3331Chr04:26898234..26898258 (25 bp)
CACTTTCTTGGTGTTCTAGTTTGCA
LOC_Os04g45800
Os.6187.1.S1_at--119--6071Chr04:26898287..26898311 (25 bp)
GAGTTCGCAGGTTATTGCACCAAAA
LOC_Os04g45800
Os.6187.1.S1_at--836--5611Chr04:26898324..26898348 (25 bp)
GACAACACTTTGGACTTGCTCTTAG
LOC_Os04g45800
Os.6187.1.S1_at--561--331Chr04:26898387..26898411 (25 bp)
ATACTTCTGCAATTTGGTCGCCATC
LOC_Os04g45800
Os.6187.1.S1_at--830--4431Chr04:26898406..26898430 (25 bp)
GCCATCTTTCTTTGCCTTATGTGGA
LOC_Os04g45800
Os.6187.1.S1_at--101--4651Chr04:26899069..26899093 (25 bp)
GCGTCAAGGGACATGTACTCTGCTC
LOC_Os04g45800
Os.6187.1.S1_at--143--5191Chr04:26899106..26899130 (25 bp)
GCAATGCATGCTTATTGGCCGGCAA
LOC_Os04g45800
Os.6187.1.S1_at--1004--8391Chr04:26899122..26899146 (25 bp)
GGCCGGCAAAGCAGACAATCTACTT
LOC_Os04g45800
Os.6187.1.S1_at--848--6631Chr04:26899235..26899259 (25 bp)
GTTGTCTATATTTCGCTACTTGCTA
LOC_Os04g45800
Os.6187.1.S1_at--460--9651Chr04:26899279..26899303 (25 bp)
TCAGAACGTGCAGACCTCGAGAATT
LOC_Os04g45800
Os.6187.1.S1_at--1086--3011Chr04:26899318..26899342 (25 bp)
AATGCTGTGATGCTTCTGTATATTC
LOC_Os04g45800
Target Sequence 
CACTTTCTTGGTGTTCTAGTTTGCAATCATTCATGCAAGACAGTGCAAAGTTTGAGTTCGCAGGTTATTGCACCAAAAGC
CAACCATGATGACAACACTTTGGACTTGCTCTTAGTTGGTGGAAAGGGTAGATGGAAGTTGTTGAAATTTTTCATACTTC
TGCAATTTGGTCGCCATCTTTCTTTGCCTTATGTGGAATATGTGAAGGTAAAGTCTGTCAAGCTTAAACCAGGTGCAAAC
ACGCACAATGGGTGTGGAATAGACGGTGAGCTTTGCCGCGTCAAGGGACATGTACTCTGCTCCCTGTTACAAGAGCAATG
CATGCTTATTGGCCGGCAAAGCAGACAATCTACTTAAGTGCTGTAAAATTAGTTGAATTTCGAGTTTTTGAGGCACTGTA
TTTTCTGTTTCCACTTCGAACAACTGATTTTTTTTTCTTTTGAGTTGTCTATATTTCGCTACTTGCTAATGGGGTGTGTG
AGTGGGTTCAGAACGTGCAGACCTCGAGAATTTGGACTGAACAAACAATGCTGTGATGCTTCTGTATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis