Browse Element(s) Details


Os.49765.1.S1_at

Description gb:AK120923.1
DB_XREF= gi:37990546
TID=Os.49765.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035G16, full insert sequence.
FL= gb:AY512581.1 gb:AK120923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4586011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45820OsAffx.14285.1.S1_at11/114+26916525..26917338hypothetical protein
LOC_Os04g45834Os.49287.1.S1_x_at11/114+26917993..26925204expressed protein
LOC_Os04g45834Os.49287.1.S1_at10/114+26917993..26925204expressed protein
LOC_Os04g45850OsAffx.31753.1.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45850OsAffx.31753.4.S1_s_at11/114+26930238..26931491hAT family dimerisation domain containing protein
LOC_Os04g45860Os.49765.1.S1_at11/114+26935253..26939713transposon protein, putative, unclassified, expressed
LOC_Os04g45870NANA4+26941277..26943606hypothetical protein
LOC_Os04g45880NANA4+26944554..26944769hypothetical protein
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49765.1.S1_at--1032--3231Chr04:26935818..26935842 (25 bp)
CAAGCTTTGCCATCGACATGTGTAT
LOC_Os04g45860
Os.49765.1.S1_at--901--6891Chr04:26935797..26935821 (25 bp)
GTATCGGGAGCCTGATAGTCTTCAC
LOC_Os04g45860
Os.49765.1.S1_at--1054--6491Chr04:26935784..26935808 (25 bp)
GATAGTCTTCACCTGGCATATAATT
LOC_Os04g45860
Os.49765.1.S1_at--1121--3731Chr04:26935741..26935765 (25 bp)
CTAATGGTGCCAGCAGTTGCATCTG
LOC_Os04g45860
Os.49765.1.S1_at--1142--7991Chr04:26935703..26935727 (25 bp)
GGATGGTCTTTGGATCTTCCCTGCG
LOC_Os04g45860
Os.49765.1.S1_at--786--7331Chr04:26935643..26935667 (25 bp)
GTGCATGGCATTTAGGTCTACAAAC
LOC_Os04g45860
Os.49765.1.S1_at--870--171Chr04:26935416..26935440 (25 bp)
ATTTTTATTGCCTCATCTCTTACCA
LOC_Os04g45860
Os.49765.1.S1_at--1075--171Chr04:26935386..26935410 (25 bp)
ATTTATGGTTTTAGCCTGTAGGCGC
LOC_Os04g45860
Os.49765.1.S1_at--1033--6611Chr04:26935297..26935321 (25 bp)
GTTGGACCCGAAGACCGAATATTGT
LOC_Os04g45860
Os.49765.1.S1_at--145--7051Chr04:26935274..26935298 (25 bp)
GTAACAGGTCTCTTTCAAGATCAGC
LOC_Os04g45860
Os.49765.1.S1_at--147--6451Chr04:26935256..26935280 (25 bp)
GATCAGCTGATCCAATTCTTACTTT
LOC_Os04g45860
Target Sequence 
CAAGCTTTGCCATCGACATGTGTATCGGGAGCCTGATAGTCTTCACCTGGCATATAATTGACAAAAGCAAAGCAGCACTA
ATGGTGCCAGCAGTTGCATCTGGTTTGATATGCGGGGATGGTCTTTGGATCTTCCCTGCGTCCTTGCTTGCTTTGGCCAA
GATCAGCCCACCAATGTGCATGGCATTTAGGTCTACAAACTAGAGGAGTAGCAGGGATTATAATTACATGGCAGTTCCAT
CTACTACAGGAAAGATGCAGCAATGCAATAATGAAGTATTATATGGGATTCCTGGAGGTACCTGTGCAGTAAATATTGGA
AAGGTACCAAACATTGTTACCATTTCCATGTCAATGAAGTAAGACAACAGATTCAAGATAATTCATCTCATAACAATGGC
GTATTTTTATTGCCTCATCTCTTACCAATGTGATTTATGGTTTTAGCCTGTAGGCGCTAATAGAAGAAATTTTGTATAGT
AGAGAAATGTTTAGTGTATACATGTATATATTTGGTGATAAGTTGGACCCGAAGACCGAATATTGTAACAGGTCTCTTTC
AAGATCAGCTGATCCAATTCTTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis