Browse Element(s) Details


Os.15542.1.S1_at

Description gb:AK101351.1
DB_XREF= gi:32986560
TID=Os.15542.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034O16, full insert sequence.
FL= gb:AK101139.1 gb:AK101351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0281011/11CBF/Mak21 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02790OsAffx.17546.1.S1_at11/119+1277420..1281979zinc-binding protein, putative, expressed
LOC_Os09g02800OsAffx.6154.1.S1_at11/119+1284630..1285442hypothetical protein
LOC_Os09g02810Os.15542.1.S1_at11/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_at2/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_x_at1/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02820OsAffx.32083.4.S1_x_at11/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_at4/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.3.S1_x_at3/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_x_at2/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.2.S1_x_at1/119+1319490..1322198hypothetical protein
LOC_Os09g02830OsAffx.6153.1.S1_at1/119+1324181..1324807SRF-type transcription factor family protein
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15542.1.S1_at--712--1331Chr09:1311058..1311082 (25 bp)
AGAGTGGAGCATCGCCATTTGCAAA
LOC_Os09g02810
Os.15542.1.S1_at--675--5371Chr09:1311087..1311111 (25 bp)
GAAGACTATGAACATCTCATGGATG
LOC_Os09g02810
Os.15542.1.S1_at--717--1491Chr09:1311148..1311172 (25 bp)
AGCACAGGGTAACCAGAGACAGCAA
LOC_Os09g02810
Os.15542.1.S1_at--828--171Chr09:1311262..1311286 (25 bp)
ATTTTCATGTTTATCGTAATCGCAA
LOC_Os09g02810
Os.15542.1.S1_at--984--6951Chr09:1311306..1311330 (25 bp)
GTAGCTTATAGTTTCGGTGTTTGTA
LOC_Os09g02810
Os.15542.1.S1_at--921--10611Chr09:1311318..1311342 (25 bp)
TTCGGTGTTTGTATCCTTCGCCCAC
LOC_Os09g02810
Os.15542.1.S1_at--858--10371Chr09:1311345..1311369 (25 bp)
TTTTCATTTGGACACGTTCCTGATG
LOC_Os09g02810
Os.15542.1.S1_at--836--2171Chr09:1311356..1311380 (25 bp)
ACACGTTCCTGATGAATATTACACT
LOC_Os09g02810
Os.15542.1.S1_at--246--391Chr09:1311386..1311410 (25 bp)
ATCACTTGGAGATTAGGGACAGATC
LOC_Os09g02810
Os.15542.1.S1_at--625--3691Chr09:1311429..1311453 (25 bp)
CTATCTCCCCTGTAATCTTCAGAAC
LOC_Os09g02810
Os.15542.1.S1_at--1059--7291Chr09:1311509..1311533 (25 bp)
GTGCGTGTGGCCTGTTGATATGCTA
LOC_Os09g02810
Target Sequence 
AGAGTGGAGCATCGCCATTTGCAAAACTAGAAGACTATGAACATCTCATGGATGGGGAAGCGGAAAAGCCAACGTTTAAG
AAGGGGCGGAAGCACAGGGTAACCAGAGACAGCAAGGAGAAGAGAAAAGGTCTGAGCAGCNAGGAGAAATCAGGATCACG
AAAGAAAAGGTCGAAGAGATCAGAATGAGATAAACATTTTTACCATTTTCATGTTTATCGTAATCGCAATGATGGTTATG
AAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCACCTTTTTCATTTGGACACGTTCCTGATGAATATTAC
ACTAAGAAATCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTATCTCCCCTGTAATCTTCAGAACCTGA
AGATGGACCAAGGCGTTCCAGACTCTTCAGACAGGTGGTATGGTGATAGTAGTGCGTGTGGCCTGTTGATATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis