Browse Element(s) Details


OsAffx.17544.1.S1_at

Description tigr:9637.m00128
TID=OsAffx.17544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0285011/11hypothetical protein
LOC_Os10g336901/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g042801/11Actin family protein, expressed
LOC_Os06g231601/11Nucleotidyl transferase family protein, expressed
LOC_Os07g438701/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02810Os.15542.1.S1_at11/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_at2/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_x_at1/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02820OsAffx.32083.4.S1_x_at11/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_at4/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.3.S1_x_at3/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_x_at2/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.2.S1_x_at1/119+1319490..1322198hypothetical protein
LOC_Os09g02830OsAffx.6153.1.S1_at1/119+1324181..1324807SRF-type transcription factor family protein
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein
LOC_Os09g02860OsAffx.29696.1.S1_at11/119+1340563..1341235hypothetical protein
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02880OsAffx.29697.1.S1_at10/119+1351117..1352234hypothetical protein
LOC_Os09g02890OsAffx.17545.1.S1_at11/119+1353909..1355501AC transposase, putative
LOC_Os09g02900NANA9+1356426..1358374transposon protein, putative, Mutator sub-class
LOC_Os09g02910OsAffx.6157.2.S1_at10/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.1.S1_x_at4/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.2296.1.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.2.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.7706.1.S1_at1/119+1360120..1368902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006325biological_processestablishment and/or maintenance of chromatin architecture
GO:0006446biological_processregulation of translational initiation
GO:0006457biological_processprotein folding
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17544.1.S1_at--645--8871Chr09:1336342..1336366 (25 bp)
TGATGTGGCTACCAACGTGGACGAT
LOC_Os09g02850
OsAffx.17544.1.S1_at--25--5671Chr09:1336409..1336433 (25 bp)
GACATGGCTGCCTACGTGGATAATG
LOC_Os09g02850
OsAffx.17544.1.S1_at--525--7511Chr09:1336424..1336448 (25 bp)
GTGGATAATGACGTCGCTGCTTACA
LOC_Os09g02850
OsAffx.17544.1.S1_at--1026--2711Chr09:1336695..1336719 (25 bp)
AAGCAGCCAGACCATTTCAAAACAG
LOC_Os09g02850
OsAffx.17544.1.S1_at--1047--3211Chr09:1336754..1336778 (25 bp)
CAAGTTTCACCTTTGCATCAGAAGC
LOC_Os09g02850
OsAffx.17544.1.S1_at--265--6971Chr09:1336803..1336827 (25 bp)
GTAGCCCAACTTGCAACACCAGGAG
LOC_Os09g02850
OsAffx.17544.1.S1_at--504--105514Chr09:1336874..1336898 (25 bp)
TTGCCACCGGTTTTTTGAATATTGC
LOC_Os09g02850
OsAffx.17544.1.S1_at--686--79326Chr12:9255883..9256359 (25 bp)
GGATACCACTCGAATGACAGTTCTA
NONE
OsAffx.17544.1.S1_at--613--56526Chr11:2669734..2669779 (25 bp)
GACAGTTCTAGTGGCATTTTTGCAA
NONE
OsAffx.17544.1.S1_at--153--2651Chr09:1337067..1337091 (25 bp)
AACCAGGAGCATCTTGCATCAGACC
LOC_Os09g02850
OsAffx.17544.1.S1_at--607--4351Chr09:1337090..1337114 (25 bp)
CCAGCAGCTCCAGGTTGGTGGTGAA
LOC_Os09g02850
Target Sequence 
TGATGTGGCTACCAACGTGGACGATGACGTGGCAGCCAATAGTGATGTGGCTGCCAACATGGACAATGACATGGCTGCCT
ACGTGGATAATGACGTCGCTGCTTACATGCCCACAACAGCAACCAAACCATTATCAGAACAGAAGCAGCCAGACCATTTC
AAAACAGCTCAATATCCATGCAAAAGCAATGCGAACAATCGCAAGTTTCACCTTTGCATCAGAAGCATGCAAATCATGAG
TCTAAGAGACGTAGCCCAACTTGCAACACCAGGAGCACAAGCTCAACACAAGAACAATAAGTCTAAGGGGCATTTGCAAA
TTTGCCACCGGTTTTTTGAATATTGCAAGGATACCACTCGAATGACAGTTCTAGTGGCATTTTTGCAATTTTCTAGTGGC
AGTTTTGCAATAATGATTCAAAGTAGTGGTAAATTTGCAATTGCCCCTAAGTCTAAAGGACAAAGAACAATAGGACAGCT
CAACCATCAGCATCTTGAATCAGAACAGAAGCTCAACCAGGAGCATCTTGCATCAGACCAGCAGCTCCAGGTTGGTGGTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis