Browse Element(s) Details


OsAffx.29695.1.S1_at

Description tigr:9637.m00115
TID=OsAffx.29695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0271011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29695.1.S1_at--139--5591Chr09:1222234..1222616 (25 bp)
GACACCGGAAAGTTGAAACATTACA
LOC_Os09g02710
OsAffx.29695.1.S1_at--57--5571Chr09:1222227..1222609 (25 bp)
GAAAGTTGAAACATTACATTGACAT
LOC_Os09g02710
OsAffx.29695.1.S1_at--610--2071Chr09:1222217..1222241 (25 bp)
ACATTACATTGACATTATGGTTGAA
LOC_Os09g02710
OsAffx.29695.1.S1_at--368--831Chr09:1222201..1222225 (25 bp)
ATGGTTGAATTGTATCTGATTTCTC
LOC_Os09g02710
OsAffx.29695.1.S1_at--206--8771Chr09:1222191..1222215 (25 bp)
TGTATCTGATTTCTCATTCTGCCAC
LOC_Os09g02710
OsAffx.29695.1.S1_at--675--9471Chr09:1222187..1222211 (25 bp)
TCTGATTTCTCATTCTGCCACTCAA
LOC_Os09g02710
OsAffx.29695.1.S1_at--792--191Chr09:1222183..1222207 (25 bp)
ATTTCTCATTCTGCCACTCAATCTT
LOC_Os09g02710
OsAffx.29695.1.S1_at--1021--91Chr09:1222176..1222200 (25 bp)
ATTCTGCCACTCAATCTTACTTCCA
LOC_Os09g02710
OsAffx.29695.1.S1_at--1087--9731Chr09:1222166..1222190 (25 bp)
TCAATCTTACTTCCACCTGCAGGTG
LOC_Os09g02710
OsAffx.29695.1.S1_at--632--3031Chr09:1222164..1222188 (25 bp)
AATCTTACTTCCACCTGCAGGTGGG
LOC_Os09g02710
OsAffx.29695.1.S1_at--955--2051Chr09:1222158..1222182 (25 bp)
ACTTCCACCTGCAGGTGGGTGTTGT
LOC_Os09g02710
Target Sequence 
GACACCGGAAAGTTGAAACATTACATTGACATTATGGTTGAATTGTATCTGATTTCTCATTCTGCCACTCAATCTTACTT
CCACCTGCAGGTGGGTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis