Browse Element(s) Details


OsAffx.29695.1.S1_s_at

Description tigr:9637.m00115
TID=OsAffx.29695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0271011/11CBS domain containing protein, expressed
LOC_Os12g266401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29695.1.S1_s_at--920--5111Chr09:1222829..1222853 (25 bp)
GCACAACAACGGAGTCTACACAGTT
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--366--7771Chr09:1222804..1222828 (25 bp)
GGTGACTTCATGACCAAAAGGCCTA
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--1070--2431Chr09:1222789..1222813 (25 bp)
AAAAGGCCTAATCTCCATGTCGTTA
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--874--9391Chr09:1222770..1222794 (25 bp)
TCGTTACACCTGCAACCTCGGTTGA
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--461--8991Chr09:1222647..1222668 (22 bp)
TGAAGCTCTCGAGACGCTGGTGCAA
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--848--5111Chr09:1222626..1222650 (25 bp)
GCAACACAAGATCTCTGGTTTCCCT
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--1027--7851Chr09:1222610..1222634 (25 bp)
GGTTTCCCTGTTGTTGATGACACCG
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--445--6411Chr09:1222123..1222147 (25 bp)
GATCTGTTAGCACTTGACTCAATAT
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--263--6271Chr09:1220841..1220865 (25 bp)
GATGTGATGACTTATTCGCCTCTTG
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--456--9331Chr09:1220826..1220850 (25 bp)
TCGCCTCTTGCGGTTCGTGAAAGTA
LOC_Os09g02710
OsAffx.29695.1.S1_s_at--1144--8852Chr12:15605299..15605738 (25 bp)
TGATGCTGCTACAAGGTTGCTACTT
LOC_Os12g26640
Target Sequence 
GCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACCTGCAACCTCGG
TTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGAAACAT
TACATTGACATTATGGTTGAATTGTATCTGATTTCTCATTCTGCCACTCAATCTTACTTCCACCTGCAGGTGGGTGTTGT
CTCAGATTATGATCTGTTAGCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGG
TGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGTGATG
ACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29695.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis