Browse Element(s) Details


OsAffx.26367.1.S1_at

Description tigr:9632.m03553
TID=OsAffx.26367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3776011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26367.1.S1_at--1061--7551Chr04:22229629..22229653 (25 bp)
GGGCCATCATTGTTGCTATACCCAT
LOC_Os04g37760
OsAffx.26367.1.S1_at--814--6671Chr04:22229640..22229664 (25 bp)
GTTGCTATACCCATCTACAGAAAGA
LOC_Os04g37760
OsAffx.26367.1.S1_at--213--4891Chr04:22229871..22229895 (25 bp)
GCTTTTCCCGGCAACGAAAATCTCA
LOC_Os04g37760
OsAffx.26367.1.S1_at--905--6671Chr04:22229901..22229925 (25 bp)
GTTGCCTCCAAGATTAAGACCGTAG
LOC_Os04g37760
OsAffx.26367.1.S1_at--505--2651Chr04:22229953..22229977 (25 bp)
AAGCCGAGGCCCTAATCCAGAAGGT
LOC_Os04g37760
OsAffx.26367.1.S1_at--871--9011Chr04:22231136..22231160 (25 bp)
TGCAATAGTGGATCCCATCATCGAC
LOC_Os04g37760
OsAffx.26367.1.S1_at--493--5511Chr04:22231249..22231273 (25 bp)
GAAAACTGCTACTGTTACAACTCAG
LOC_Os04g37760
OsAffx.26367.1.S1_at--474--10851Chr04:22231283..22231307 (25 bp)
TTGGTAGCACCACGACAACAGGCAA
LOC_Os04g37760
OsAffx.26367.1.S1_at--965--71Chr04:22231325..22231349 (25 bp)
ATTGCCTTCCCGATTGATTGATGAT
LOC_Os04g37760
OsAffx.26367.1.S1_at--885--9751Chr04:22231355..22231379 (25 bp)
TAATAGACGCTTGCAGCGCAGGCGT
LOC_Os04g37760
OsAffx.26367.1.S1_at--806--4111Chr04:22231371..22231395 (25 bp)
CGCAGGCGTGTGTTTGTACAGTTCC
LOC_Os04g37760
Target Sequence 
GGGCCATCATTGTTGCTATACCCATCTACAGAAAGATAAGAGCATTGGAAGACACCGTGGAGAAGACAGCGGAGGTAGCA
ATCGAGGTGGTCGACACGGTGGCGGAGGCGACTGAGAAGGTCGCCGGCGAGCTGGCCGACGCTTTTCCCGGCAACGAAAA
TCTCAAGGAGGTTGCCTCCAAGATTAAGACCGTAGCCGATGTGATAGAGGATGATGCCGAGAAAGCCGAGGCCCTAATCC
AGAAGGTTGATGAGATAAAGAAAGAGTTGGATGCAATAGTGGATCCCATCATCGACAAGATAGACAAGGAAGAGCTGTAG
GGGAAGGACCCTTTTGGCAGGAGGGGGAAAGCAAACAGAAACTAAATACACATTTAGTAGCAAAGAAAACTGCTACTGTT
ACAACTCAGTTTTTTAGTTTGGTAGCACCACGACAACAGGCAAAATGCGTGTTTGATGCCATTGCCTTCCCGATTGATTG
ATGATTGATATAATAGACGCTTGCAGCGCAGGCGTGTGTTTGTACAGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis