Browse Element(s) Details


OsAffx.26369.1.S1_at

Description tigr:9632.m03557
TID=OsAffx.26369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3780011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37830OsAffx.21171.5.S1_x_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37830OsAffx.1674.1.S1_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37840OsAffx.447.1.S1_at5/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840Os.52609.1.S1_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.1.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.2.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26369.1.S1_at--58--3251Chr04:22252082..22252106 (25 bp)
CAACCGGACGTCAGGACTCGCGGGA
LOC_Os04g37800
OsAffx.26369.1.S1_at--43--5711Chr04:22252096..22252120 (25 bp)
GACTCGCGGGACTCAGGACCGAAAT
LOC_Os04g37800
OsAffx.26369.1.S1_at--961--4131Chr04:22252100..22252124 (25 bp)
CGCGGGACTCAGGACCGAAATGGTC
LOC_Os04g37800
OsAffx.26369.1.S1_at--566--1791Chr04:22252113..22252137 (25 bp)
ACCGAAATGGTCTTGTCACACGCAT
LOC_Os04g37800
OsAffx.26369.1.S1_at--720--2971Chr04:22252118..22252142 (25 bp)
AATGGTCTTGTCACACGCATCGTGT
LOC_Os04g37800
OsAffx.26369.1.S1_at--464--2171Chr04:22252130..22252154 (25 bp)
ACACGCATCGTGTGCTCTCATTCAG
LOC_Os04g37800
OsAffx.26369.1.S1_at--270--3551Chr04:22252135..22252159 (25 bp)
CATCGTGTGCTCTCATTCAGCTCTG
LOC_Os04g37800
OsAffx.26369.1.S1_at--726--8691Chr04:22252140..22252164 (25 bp)
TGTGCTCTCATTCAGCTCTGCCTGT
LOC_Os04g37800
OsAffx.26369.1.S1_at--139--1591Chr04:22252153..22252177 (25 bp)
AGCTCTGCCTGTGCTGAGTCGCTGA
LOC_Os04g37800
OsAffx.26369.1.S1_at--897--8671Chr04:22252162..22252186 (25 bp)
TGTGCTGAGTCGCTGACCCTTTCTG
LOC_Os04g37800
OsAffx.26369.1.S1_at--821--7231Chr04:22252170..22252194 (25 bp)
GTCGCTGACCCTTTCTGTGGATTTA
LOC_Os04g37800
Target Sequence 
CAACCGGACGTCAGGACTCGCGGGACTCAGGACCGAAATGGTCTTGTCACACGCATCGTGTGCTCTCATTCAGCTCTGCC
TGTGCTGAGTCGCTGACCCTTTCTGTGGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis