Browse Element(s) Details


Os.51127.1.S1_a_at

Description gb:AK068176.1
DB_XREF= gi:32978194
TID=Os.51127.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132G13, full insert sequence.
FL= gb:AK068176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3782011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37830OsAffx.21171.5.S1_x_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37830OsAffx.1674.1.S1_at1/114+22269931..22272043retrotransposon protein, putative, unclassified
LOC_Os04g37840OsAffx.447.1.S1_at5/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840Os.52609.1.S1_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.1.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g37840OsAffx.22947.2.S1_x_at1/114+22275580..22280130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51127.1.S1_a_at--821--2611Chr04:22263804..22263828 (25 bp)
AACCGCCGGTACAGCTGCACCGAGT
LOC_Os04g37820
Os.51127.1.S1_a_at--59--4091Chr04:22263866..22263890 (25 bp)
CGACGCGGTGGAGGCCAAGATACGG
LOC_Os04g37820
Os.51127.1.S1_a_at--340--8531Chr04:22263898..22263922 (25 bp)
TGGGAGGAGACAAGGGCCGGGAGAT
LOC_Os04g37820
Os.51127.1.S1_a_at--1110--3191Chr04:22264034..22264058 (25 bp)
CAAGGCTCGGTAGGACAACGTGCAC
LOC_Os04g37820
Os.51127.1.S1_a_at--232--911Chr04:22264036..22264060 (25 bp)
AGGCTCGGTAGGACAACGTGCACTA
LOC_Os04g37820
Os.51127.1.S1_a_at--513--4771Chr04:22264038..22264062 (25 bp)
GCTCGGTAGGACAACGTGCACTAGT
LOC_Os04g37820
Os.51127.1.S1_a_at--921--9431Chr04:22264040..22264064 (25 bp)
TCGGTAGGACAACGTGCACTAGTGC
LOC_Os04g37820
Os.51127.1.S1_a_at--812--6911Chr04:22264043..22264067 (25 bp)
GTAGGACAACGTGCACTAGTGCCGC
LOC_Os04g37820
Os.51127.1.S1_a_at--652--951Chr04:22264045..22264069 (25 bp)
AGGACAACGTGCACTAGTGCCGCCT
LOC_Os04g37820
Os.51127.1.S1_a_at--457--2211Chr04:22264048..22264072 (25 bp)
ACAACGTGCACTAGTGCCGCCTGTT
LOC_Os04g37820
Os.51127.1.S1_a_at--353--1911Chr04:22264051..22264075 (25 bp)
ACGTGCACTAGTGCCGCCTGTTGCA
LOC_Os04g37820
Target Sequence 
AACCGCCGGTACAGCTGCACCGAGTGGGGCGTCGCCATGGAGATCGACGACGACGTGCGGCGCGACGCGGTGGAGGCCAA
GATACGGGAGGCGATGGGAGGAGACAAGGGCCGGGAGATGCGCCGCCGGGCGGGCGAGTGGANNNAGGAGACCGGCCTCC
GCGCGACGCGCCCCGGCGGCCGCGNGCACGCCAGCCTCGACGCGCTGGTCGCCGACGTCCTCCTCTCCGGTGGCAAGGCT
CGGTAGGACAACGTGCACTAGTGCCGCCTGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51127.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis