Browse Element(s) Details


Os.12813.3.S1_x_at

Description gb:AK120198.1
DB_XREF= gi:37989821
TID=Os.12813.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12813 (NCBI UniGene Cluster)
UG_TITLE=Disease-resistent-related protein (RH3) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036N20, full insert sequence.
FL= gb:AK120198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2731011/11Histone H3, putative, expressed
LOC_Os04g377801/11Core histone H2A/H2B/H3/H4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12813.3.S1_x_at--302--6011Chr03:15625892..15625913 (22 bp)
GAGAGATGGCCCGTACCAAGCAGAC
LOC_Os03g27310
Os.12813.3.S1_x_at--1152--1371Chr03:15625910..15625934 (25 bp)
AGACCGCTCGTAAGTCCACAGGAGG
LOC_Os03g27310
Os.12813.3.S1_x_at--981--5571Chr03:15625934..15625958 (25 bp)
GAAAGGCTCCCAGGAAGCAGCTTGC
LOC_Os03g27310
Os.12813.3.S1_x_at--184--1712Chr04:22244142..22244162 (21 bp)
ACCAAGGCTGCTCGTAAGTCTGCTC
LOC_Os04g37780
Os.12813.3.S1_x_at--508--8011Chr03:15626078..15626330 (25 bp)
GGAGGAGTTAAGAAGCCCCATTCAT
LOC_Os03g27310
Os.12813.3.S1_x_at--103--2691Chr03:15626512..15626536 (25 bp)
AAGCGTGTGACCATCATGCCTAAGG
LOC_Os03g27310
Os.12813.3.S1_x_at--909--4271Chr03:15626583..15626607 (25 bp)
CCTCGGCGATTCCTTTGACAAATGA
LOC_Os03g27310
Os.12813.3.S1_x_at--135--6791Chr03:15626781..15626805 (25 bp)
GTTAGTCTGATTCGTTTGCGTCTTA
LOC_Os03g27310
Os.12813.3.S1_x_at--643--10651Chr03:15626796..15626820 (25 bp)
TTGCGTCTTATTCTAGCGGTGCTGC
LOC_Os03g27310
Os.12813.3.S1_x_at--388--3371Chr03:15626864..15626888 (25 bp)
CACCTGTCTCTAATCCGTGTTAATG
LOC_Os03g27310
Os.12813.3.S1_x_at--406--2991Chr03:15626885..15626909 (25 bp)
AATGTAAGTGTTCCGTTGCTGTCCG
LOC_Os03g27310
Target Sequence 
GAGAGATGGCCCGTACCAAGCAGACCGCTCGTAAGTCCACAGGAGGAAAGGCTCCCAGGAAGCAGCTTGCCACCAAGGCT
GCTCGTAAGTCTGCTCCCACCACTGGAGGAGTTAAGAAGCCCCATTCATGCCAAGCGTGTGACCATCATGCCTAAGGACA
TTCAGCTGGCTAGGAGGATTCGTGGTGAGAGGGCTTAAATTCCCCTCGGCGATTCCTTTGACAAATGAAGCATGCGTCGT
AGTGTTAGTAGTGGGTTTTAATCTTTTGCTTATAAGAACAATCTGAGTAGGGTGTATTTTGTGGAACAATATGTTTCTCA
TGATGGTGCTGTATTCGTCTTATTGGTGGATCTGTCAAAAATACTCAGCATATTGTCAGTGTGTCTGGTGACTCTTATTT
TGTTAGTCTGATTCGTTTGCGTCTTATTCTAGCGGTGCTGCCTCTTTGGCACTGTGCATGGCTAGATACAATTACATTGT
AATTCACCTGTCTCTAATCCGTGTTAATGTAAGTGTTCCGTTGCTGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12813.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis