Browse Element(s) Details


Os.10256.1.S1_at

Description gb:AK121621.1
DB_XREF= gi:37991244
TID=Os.10256.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045B01, full insert sequence.
FL= gb:AK061827.1 gb:AK121621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2726011/1140S ribosomal protein S6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10256.1.S1_at--441--6911Chr03:15601683..15601707 (25 bp)
GTATGTCAACACTTACCGCAGAACC
LOC_Os03g27260
Os.10256.1.S1_at--746--1991Chr03:15601368..15601392 (25 bp)
ACTCCCCTGACTCTTCAGAGGAAGA
LOC_Os03g27260
Os.10256.1.S1_at--660--4811Chr03:15601188..15601212 (25 bp)
GCATAAGACCCCTATAAGACCTTAA
LOC_Os03g27260
Os.10256.1.S1_at--768--3811Chr03:15601114..15601138 (25 bp)
CTGCTAGTTTTTCTTCGGTAATTGG
LOC_Os03g27260
Os.10256.1.S1_at--939--5111Chr03:15601045..15601069 (25 bp)
GCACTTGCAGTTGCTATGTATTCTG
LOC_Os03g27260
Os.10256.1.S1_at--659--111Chr03:15601026..15601050 (25 bp)
ATTCTGATGATATAACTTGTGCCTA
LOC_Os03g27260
Os.10256.1.S1_at--646--7271Chr03:15601008..15601032 (25 bp)
GTGCCTACTATTTTCTTGGTTTTTG
LOC_Os03g27260
Os.10256.1.S1_at--820--8871Chr03:15600976..15601000 (25 bp)
TGATGTCTCGTAATATCTCTCTCCT
LOC_Os03g27260
Os.10256.1.S1_at--980--9491Chr03:15600957..15600981 (25 bp)
TCTCCTTGACTGTTTTATATCCCTG
LOC_Os03g27260
Os.10256.1.S1_at--756--251Chr03:15600941..15600965 (25 bp)
ATATCCCTGTTATGCATTTCTAGTG
LOC_Os03g27260
Os.10256.1.S1_at--205--3591Chr03:15600927..15600951 (25 bp)
CATTTCTAGTGCTATTTTCTGTGAA
LOC_Os03g27260
Target Sequence 
GTATGTCAACACTTACCGCAGAACCTTCACTACCAAGAACGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTG
TCACTCCCCTGACTCTTCAGAGGAAGAGGGCGAGAATCGCCCAGAAGAAGCAAAGAATTGCCAAGAAGAAGTCCGAGGCT
GCCGAGTACCAGAAGCTGCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCAGGAGTGAGAGCTTGGCAAAGAGGAGGTC
CAAGCTTTNNNNNNNNNNNNNNNCTGCTGCCACCACCGCATAAGACCCCTATAAGACCTTAAAACATTATAGATGAGGAA
GTGTTTGTCGTTGTGATGGATAGACATGGTNCTGCTAGTTTTTCTTCGGTAATTGGNGCAGTTTTCTGTGGACAAGATGA
TGCTTTGTCACAATTTTTNGAGCACTTGCAGTTGCTATGTATTCTGATGATATAACTTGTGCCTACTATTTTCTTGGTTT
TTGTGTCNATTTGATGTCTCGTAATATCTCTCTCCTTGACTGTTTTATATCCCTGTTATGCATTTCTAGTGCTATTTTCT
GTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis