Browse Element(s) Details


Os.2681.1.S1_at

Description gb:AB025187.1
DB_XREF= gi:4586448
GEN=COX6b-1
TID=Os.2681.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2681 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for cytochrome c oxidase subunit 6b-1, complete cds.
PROD=cytochrome c oxidase subunit 6b-1
FL= gb:AB025187.1 gb:AK120174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2729011/11Cytochrome c oxidase subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2681.1.S1_at--842--6371Chr03:15619460..15619484 (25 bp)
GATCGAAACGGCTCCAGCAGATTTC
LOC_Os03g27290
Os.2681.1.S1_at--396--1511Chr03:15619475..15619499 (25 bp)
AGCAGATTTCCGTTTCCCAACAACA
LOC_Os03g27290
Os.2681.1.S1_at--639--2931Chr03:15619508..15619532 (25 bp)
AAGGCACTGTTTCACACGCTATGTT
LOC_Os03g27290
Os.2681.1.S1_at--976--1191Chr03:15619534..15619675 (25 bp)
AGTATCACAGGTGCGTAGCTGCGAA
LOC_Os03g27290
Os.2681.1.S1_at--33--2271Chr03:15619710..15619734 (25 bp)
AAATACTATCGATCTCTTTGCCCAG
LOC_Os03g27290
Os.2681.1.S1_at--374--8851Chr03:15620944..15620968 (25 bp)
TGAGCAACGGGAAAACGGCACCTTC
LOC_Os03g27290
Os.2681.1.S1_at--336--1411Chr03:15620999..15621023 (25 bp)
AGAACATACGTTGTTGTCCGGGCTC
LOC_Os03g27290
Os.2681.1.S1_at--745--9571Chr03:15621024..15621048 (25 bp)
TCTTCGTTGGTAACTGGCGTCATGT
LOC_Os03g27290
Os.2681.1.S1_at--1013--6431Chr03:15621148..15621172 (25 bp)
GATCATCCTCTGCACTGCTGAGAAA
LOC_Os03g27290
Os.2681.1.S1_at--961--131Chr03:15621178..15621202 (25 bp)
ATTACAGCTATGATCTTCCTCCCTT
LOC_Os03g27290
Os.2681.1.S1_at--701--5711Chr03:15621203..15621227 (25 bp)
GACTGATCTTCCATAACTGTTTTCT
LOC_Os03g27290
Target Sequence 
GATCGAAACGGCTCCAGCAGATTTCCGTTTCCCAACAACAAATCAAACAAGGCACTGTTTCACACGCTATGTTGAGTATC
ACAGGTGCGTAGCTGCGAAAGGGGAGGATGCTCCTGAGTGTGATAAGTTTGCAAAATACTATCGATCTCTTTGCCCAGGC
GAATGGGTTGAGCGTTGGAATGAGCAACGGGAAAACGGCACCTTCCCTGGACCTCTGTAAGCATGTGCAAAGGGGAGAAC
ATACGTTGTTGTCCGGGCTCTCTTCGTTGGTAACTGGCGTCATGTTATCAGAATCGGAGGGATCGTCCTTTTTTTTGGAG
AGATTTACAAATAAGAGATTTCTTTTTTTATTTGAAGAATGACATCTGTTGACTCTACCTAAACGATCATCCTCTGCACT
GCTGAGAAACTCACATTACAGCTATGATCTTCCTCCCTTGACTGATCTTCCATAACTGTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis