Browse Element(s) Details


Os.25101.2.A1_s_at

Description gb:CA763566
DB_XREF= gi:25807605
DB_XREF=BR060012B10E01.ab1
CLONE=BR060012B10E01.ab1
TID=Os.25101.2
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25101 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T00694 (A.thaliana) T00694 hypothetical protein F6E13.27 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2735011/11Peptidase family C54 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein
LOC_Os03g27390Os.28061.1.S1_at11/113+15664348..15668007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25101.2.A1_s_at--1102--8791Chr03:15643937..15643961 (25 bp)
TGTTCTCGGGCCTCTGAGCTAGTGG
LOC_Os03g27350
Os.25101.2.A1_s_at--486--9431Chr03:15643942..15643966 (25 bp)
TCGGGCCTCTGAGCTAGTGGACAAA
LOC_Os03g27350
Os.25101.2.A1_s_at--352--3771Chr03:15643948..15643972 (25 bp)
CTCTGAGCTAGTGGACAAAGCCAAT
LOC_Os03g27350
Os.25101.2.A1_s_at--715--3251Chr03:15644065..15644089 (25 bp)
CAACGTTGAGGGTCTCGATGGCTCT
LOC_Os03g27350
Os.25101.2.A1_s_at--868--3431Chr03:15644114..15644138 (25 bp)
CAGATTCTTTAGTGATGAAGTGGAA
LOC_Os03g27350
Os.25101.2.A1_s_at--518--2411Chr03:15644166..15644190 (25 bp)
AAAAATGTTGCGTCCAACACATCGG
LOC_Os03g27350
Os.25101.2.A1_s_at--253--8811Chr03:15644171..15644195 (25 bp)
TGTTGCGTCCAACACATCGGTGGAA
LOC_Os03g27350
Os.25101.2.A1_s_at--17--3551Chr03:15644185..15644209 (25 bp)
CATCGGTGGAATGCCCTTGTTTTAT
LOC_Os03g27350
Os.25101.2.A1_s_at--946--7431Chr03:15644250..15644274 (25 bp)
GTGTAGAGAACAAGCTGGACTGTCT
LOC_Os03g27350
Os.25101.2.A1_s_at--922--3231Chr03:15644260..15644284 (25 bp)
CAAGCTGGACTGTCTCAATAGCCCA
LOC_Os03g27350
Os.25101.2.A1_s_at--567--4711Chr03:15644263..15644287 (25 bp)
GCTGGACTGTCTCAATAGCCCAGGG
LOC_Os03g27350
Target Sequence 
TGTTCTCGGGCCTCTGAGCTAGTGGACAAAGCCAATGGAGCACCACTCTTNACCGTCATGCAGTCGGTTCAACCTTCAAA
ACAAATGTATAATGAGGAGAGTAGCTCAGGGGATGGCATGGACATCATCAACGTTGAGGGTCTCGATGGCTCTGGTGAAA
CGGGAGAGGAGGAATGGCAGATTCTTTAGTGATGAAGTGGAAAAAAACTGACTTCNCGAGGAAACTGAAAAAAAATGTTG
CGTCCAACACATCGGTGGAATGCCCTTGTTTTATGTGTGGGTGAATGAATAGAAATGACTCGTTATTTTAGAGTGTGTAG
AGAACAAGCTGGACTGTCTCAATAGCCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25101.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis