Browse Element(s) Details


OsAffx.13074.1.S1_at

Description tigr:9631.m02703
TID=OsAffx.13074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2738011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein
LOC_Os03g27390Os.28061.1.S1_at11/113+15664348..15668007expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13074.1.S1_at--819--9451Chr03:15661591..15661615 (25 bp)
TCTGGCCACCCGATGGCCAAATCGA
LOC_Os03g27380
OsAffx.13074.1.S1_at--1097--1791Chr03:15661584..15661608 (25 bp)
ACCCGATGGCCAAATCGACCGAACT
LOC_Os03g27380
OsAffx.13074.1.S1_at--448--4051Chr03:15661581..15661605 (25 bp)
CGATGGCCAAATCGACCGAACTCAT
LOC_Os03g27380
OsAffx.13074.1.S1_at--1068--6211Chr03:15661580..15661604 (25 bp)
GATGGCCAAATCGACCGAACTCATG
LOC_Os03g27380
OsAffx.13074.1.S1_at--666--871Chr03:15661579..15661603 (25 bp)
ATGGCCAAATCGACCGAACTCATGG
LOC_Os03g27380
OsAffx.13074.1.S1_at--251--8431Chr03:15661578..15661602 (25 bp)
TGGCCAAATCGACCGAACTCATGGC
LOC_Os03g27380
OsAffx.13074.1.S1_at--336--4391Chr03:15661576..15661600 (25 bp)
GCCAAATCGACCGAACTCATGGCGG
LOC_Os03g27380
OsAffx.13074.1.S1_at--494--4371Chr03:15661575..15661599 (25 bp)
CCAAATCGACCGAACTCATGGCGGG
LOC_Os03g27380
OsAffx.13074.1.S1_at--317--2551Chr03:15661572..15661596 (25 bp)
AATCGACCGAACTCATGGCGGGGGT
LOC_Os03g27380
OsAffx.13074.1.S1_at--452--971Chr03:15661510..15661534 (25 bp)
AGGAGCGCCCGTCGTGGCAGCGATG
LOC_Os03g27380
OsAffx.13074.1.S1_at--1073--4151Chr03:15661505..15661529 (25 bp)
CGCCCGTCGTGGCAGCGATGGTGGT
LOC_Os03g27380
Target Sequence 
TCTGGCCACCCGATGGCCAAATCGACCGAACTCATGGCGGGGGTGGCGGAGCTCGCAGCGGCAACAGGGCGAGCTCGTGG
CAGGAGCGCCCGTCGTGGCAGCGATGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis