Browse Element(s) Details


OsAffx.13073.1.S1_at

Description tigr:9631.m02701
TID=OsAffx.13073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RING-H2 zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2736011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein
LOC_Os03g27390Os.28061.1.S1_at11/113+15664348..15668007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13073.1.S1_at--677--2631Chr03:15647650..15647674 (25 bp)
AACCACACGGTGGTCAACGTCGACA
LOC_Os03g27360
OsAffx.13073.1.S1_at--710--2571Chr03:15647665..15647689 (25 bp)
AACGTCGACACACCGGAGTCAACGA
LOC_Os03g27360
OsAffx.13073.1.S1_at--507--5611Chr03:15647671..15647695 (25 bp)
GACACACCGGAGTCAACGATCGGAA
LOC_Os03g27360
OsAffx.13073.1.S1_at--952--3251Chr03:15647684..15647708 (25 bp)
CAACGATCGGAAAGGACTCGCCGTC
LOC_Os03g27360
OsAffx.13073.1.S1_at--571--6611Chr03:15647915..15647939 (25 bp)
GTTGGTCGGCGCTGCTCCGTGCATT
LOC_Os03g27360
OsAffx.13073.1.S1_at--390--9291Chr03:15647930..15647954 (25 bp)
TCCGTGCATTGTCCGGGCCGCGATA
LOC_Os03g27360
OsAffx.13073.1.S1_at--686--4211Chr03:15647947..15647971 (25 bp)
CCGCGATACAGCGACATGGACGGCG
LOC_Os03g27360
OsAffx.13073.1.S1_at--195--8551Chr03:15648089..15648113 (25 bp)
TGGAGAAGTACTACGCGCACAGCCT
LOC_Os03g27360
OsAffx.13073.1.S1_at--276--2151Chr03:15648107..15648131 (25 bp)
ACAGCCTCACGTTCGCGGGATTCGT
LOC_Os03g27360
OsAffx.13073.1.S1_at--1114--8191Chr03:15648160..15648184 (25 bp)
TGGAACCCCGAGGTGTTCCAGGTGT
LOC_Os03g27360
OsAffx.13073.1.S1_at--288--1051Chr03:15648170..15648194 (25 bp)
AGGTGTTCCAGGTGTCCACCGCCGT
LOC_Os03g27360
Target Sequence 
AACCACACGGTGGTCAACGTCGACACACCGGAGTCAACGATCGGAAAGGACTCGCCGTCCGATCAGCAGCCGCCGGAGTC
GTTGACGGCGGAGGAGCGGGTGGACCGGTACACGCTGCGGCTGCCGGAGAGGCTGAAGAGGGAGATCGAGGAGGCCAAGC
TGCTCCGCCGGTCGGTGAGCGCGGTCACCGCGCCCGCGGCCGCGTCGAGCGGGCGGTGGGCGTCGGCGGCGTCGCGGACA
ATGTCGGCGGCGCGTCCGAGCCGGCGTTGGTCGGCGCTGCTCCGTGCATTGTCCGGGCCGCGATACAGCGACATGGACGG
CGGCGGCGGCGGCGGCCGGAGGGTGGCGCCGCTGCAAACCCACGGCGCCACCGGCACGAGCCATGGCGAAGGGGAGGACG
TCGAGGTGGTGGTGGTGCACGGCGACGCCGGGACGGACGTGGAGAAGTACTACGCGCACAGCCTCACGTTCGCGGGATTC
GTGATCGACGGCGACGTCGCCGCCGGCGACTGGAACCCCGAGGTGTTCCAGGTGTCCACCGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis