Browse Element(s) Details


OsAffx.25250.1.S1_at

Description tigr:9631.m02692
TID=OsAffx.25250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g273008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25250.1.S1_at--235--9711Chr03:15623920..15623944 (25 bp)
TCAACTGCAGTTTTGTCACTCGTCA
NONE
OsAffx.25250.1.S1_at--893--8731Chr03:15623907..15623931 (25 bp)
TGTCACTCGTCAGCCAGGGAAAACC
NONE
OsAffx.25250.1.S1_at--539--2431NONE
AAAAGGCTATACTGCCGCTCTCTCT
NONE
OsAffx.25250.1.S1_at--633--9331Chr03:15623189..15623213 (25 bp)
TCGCCGAACTCCTTGTACTATGTGA
LOC_Os03g27300
OsAffx.25250.1.S1_at--1044--9891Chr03:15623174..15623198 (25 bp)
TACTATGTGAGGTCATGCCGCACGG
LOC_Os03g27300
OsAffx.25250.1.S1_at--1045--9171Chr03:15623159..15623183 (25 bp)
TGCCGCACGGTGCACAACAAGATAT
LOC_Os03g27300
OsAffx.25250.1.S1_at--1120--1251Chr03:15623140..15623164 (25 bp)
AGATATCACCACTCTTCGCGGTGGA
LOC_Os03g27300
OsAffx.25250.1.S1_at--545--9591Chr03:15623083..15623107 (25 bp)
TCATCTCCACCTGCGGCAAGGGTTA
LOC_Os03g27300
OsAffx.25250.1.S1_at--1070--8211Chr03:15623069..15623093 (25 bp)
GGCAAGGGTTACATGTTCCCATCCC
LOC_Os03g27300
OsAffx.25250.1.S1_at--988--771Chr03:15623030..15623054 (25 bp)
ATGTGCTCCTTCTTCGTGTTTGGCT
LOC_Os03g27300
OsAffx.25250.1.S1_at--819--7431Chr03:15623015..15623039 (25 bp)
GTGTTTGGCTCTGGTGCAACGACAA
LOC_Os03g27300
Target Sequence 
TCAACTGCAGTTTTGTCACTCGTCAGCCAGGGAAAACCGAAGGAAAAGGCTATACTGCCGCTCTCTCTGTCGCCGAACTC
CTTGTACTATGTGAGGTCATGCCGCACGGTGCACAACAAGATATCACCACTCTTCGCGGTGGAGCTCGAGCTCCTCCTCT
GTAGCAACCACTACTTCATCTCCACCTGCGGCAAGGGTTACATGTTCCCATCCCCACTCAGCTACGCTATGTGCTCCTTC
TTCGTGTTTGGCTCTGGTGCAACGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis