Browse Element(s) Details


OsAffx.3340.1.S1_at

Description tigr:9631.m02696
TID=OsAffx.3340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2733011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3340.1.S1_at--940--7031Chr03:15634274..15634298 (25 bp)
GTACACACCCATTATATTTGAAGCA
LOC_Os03g27330
OsAffx.3340.1.S1_at--702--5231Chr03:15634308..15634332 (25 bp)
GAATATGAACGTTTCATGGCAGCAT
LOC_Os03g27330
OsAffx.3340.1.S1_at--363--5351Chr03:15634398..15634419 (22 bp)
GAAGAGGAGTACATGGTTGCTGACA
LOC_Os03g27330
OsAffx.3340.1.S1_at--666--6671Chr03:15634413..15634751 (25 bp)
GTTGCTGACAACACGCTTAACATCC
LOC_Os03g27330
OsAffx.3340.1.S1_at--1153--1811Chr03:15634739..15634763 (25 bp)
ACGCTTAACATCCTCACCAAGGAAG
LOC_Os03g27330
OsAffx.3340.1.S1_at--346--10251Chr03:15634798..15634822 (25 bp)
TTTGGGAGACCCATGTGCAGCTCGT
LOC_Os03g27330
OsAffx.3340.1.S1_at--193--7331Chr03:15634812..15634836 (25 bp)
GTGCAGCTCGTGTTGATGTTCAAGA
LOC_Os03g27330
OsAffx.3340.1.S1_at--553--6831Chr03:15634844..15634868 (25 bp)
GTTTCACTTACTAATGCAAGCCTAA
LOC_Os03g27330
OsAffx.3340.1.S1_at--248--2791Chr03:15635061..15635085 (25 bp)
AAGATGTTGAGAATGCTGGACTGCA
LOC_Os03g27330
OsAffx.3340.1.S1_at--303--9131Chr03:15635074..15635098 (25 bp)
TGCTGGACTGCAGGCACAAGCTGTA
LOC_Os03g27330
OsAffx.3340.1.S1_at--887--5931Chr03:15635104..15635128 (25 bp)
GAGCAGTTCTAGGACCAACATCAGT
LOC_Os03g27330
Target Sequence 
GTACACACCCATTATATTTGAAGCATTCCAAGCTGAATATGAACGTTTCATGGCAGCATGTGCTGAAGTGTTGGATGGAG
ATAATAAATATCTTGTTGCAATTGGAGATGAGAATTTAGCATTTGAAGAGGAGTACATGGTTGCTGACAACACGCTTAAC
ATCCTCACCAAGGAAGTTGAAAATAAAATGGCTACAAGTCCATGTATTAATTTGGGAGACCCATGTGCAGCTCGTGTTGA
TGTTCAAGAACCAAATGTTTCACTTACTAATGCAAGCCTAAAGAAGAAAGAATTCCGTACAAGAAATTTGAAGAGGAATA
GATCATGGACAGATAAGAATGGGACAAGGAGGAAAAAACAAAGTACAACTAAAAAAACTAAGCAACAAGATGTTGAGAAT
GCTGGACTGCAGGCACAAGCTGTAGAAGAGAGCAGTTCTAGGACCAACATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis