Browse Element(s) Details


Os.10815.1.S1_at

Description gb:AK103600.1
DB_XREF= gi:32988809
TID=Os.10815.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17YPR003
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133F17, full insert sequence.
FL= gb:AK103600.1 gb:AB110190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2732011/11Transthyretin precursor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10815.1.S1_at--626--2611Chr03:15630290..15630314 (25 bp)
AACCCATGTTTTGGATGTCGCTCGT
LOC_Os03g27320
Os.10815.1.S1_at--360--9431Chr03:15630311..15630335 (25 bp)
TCGTGGATCGCCAGCATCAGGAATT
LOC_Os03g27320
Os.10815.1.S1_at--925--4171Chr03:15630412..15630436 (25 bp)
CCCTGGGCTCATCGGTTACGAACAA
LOC_Os03g27320
Os.10815.1.S1_at--649--1611Chr03:15630447..15630471 (25 bp)
AGCGGTCAACTGATGGACATTGTCA
LOC_Os03g27320
Os.10815.1.S1_at--750--2831Chr03:15630500..15630524 (25 bp)
AAGTTTCAACACCAGCAAGTATGCA
LOC_Os03g27320
Os.10815.1.S1_at--275--2831Chr03:15630516..15630540 (25 bp)
AAGTATGCACCTTCAGGGTTCTTCC
LOC_Os03g27320
Os.10815.1.S1_at--700--7671Chr03:15630531..15630555 (25 bp)
GGGTTCTTCCCTTATGTGAGCATCA
LOC_Os03g27320
Os.10815.1.S1_at--1065--1691Chr03:15630574..15630598 (25 bp)
ACCAGACGACCGAGCATTTCCATGT
LOC_Os03g27320
Os.10815.1.S1_at--117--211Chr03:15630589..15630613 (25 bp)
ATTTCCATGTCCCTCTGTTGCATTC
LOC_Os03g27320
Os.10815.1.S1_at--71--10391Chr03:15630618..15630642 (25 bp)
TTTTCATTCACCACTTACCGTGGCA
LOC_Os03g27320
Os.10815.1.S1_at--214--631Chr03:15630673..15630697 (25 bp)
ATGCTGCATATTCCATCTGAAAAGT
LOC_Os03g27320
Target Sequence 
AACCCATGTTTTGGATGTCGCTCGTGGATCGCCAGCATCAGGAATTGAAGTTCACCTAGAGATGTGGAAGGATGCATCAA
CACCCCCATCATTCAACAACAAAGATTTCAATGGATGGGNNACCCTGGGCTCATCGGTTACGAACAANGATGGCCGNAGC
GGTCAACTGATGGACATTGTCAANAACGTCGCTCCTGGTTTCTANCGCATAAGTTTCAACACCAGCAAGTATGCACCTTC
AGGGTTCTTCCCTTATGTGAGCATCATATTTGAGATAAANAAGAACCAGACGACCGAGCATTTCCATGTCCCTCTGTTGC
ATTCTCCTTTTTCATTCACCACTTACCGTGGCAGNTAAGTTNNNAGCCTGNCCCNAAGTCTGCGANATGCTGCATATTCC
ATCTGAAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis