Browse Element(s) Details


Os.12645.1.S1_at

Description gb:AB125302.1
DB_XREF= gi:46917329
GEN=SAPK1
TID=Os.12645.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12645 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK1 mRNA for serinethreonine protein kinase SAPK1, complete cds.
PROD=serinethreonine protein kinase SAPK1
FL= gb:AK068899.1 gb:AK060856.1 gb:AB125302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2728011/11Abscisic acid-inducible protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12645.1.S1_at--1076--10191Chr03:15607766..15607790 (25 bp)
TATTCAATTCCAGACTACGTTCGAG
LOC_Os03g27280
Os.12645.1.S1_at--11--9931Chr03:15607751..15607775 (25 bp)
TACGTTCGAGTTTCAGCGGACTGCA
LOC_Os03g27280
Os.12645.1.S1_at--887--8971Chr03:15607462..15607486 (25 bp)
TGAACACGCCGTCGCAGAGCCTGGA
LOC_Os03g27280
Os.12645.1.S1_at--554--1031Chr03:15607435..15607459 (25 bp)
AGGTCATGGCGATCATTCAGGAGGC
LOC_Os03g27280
Os.12645.1.S1_at--416--8071Chr03:15607354..15607378 (25 bp)
GGAGCATGGATCTCGACGACATCGA
LOC_Os03g27280
Os.12645.1.S1_at--473--3991Chr03:15607290..15607314 (25 bp)
CGTGTGCGCCTTGTGATCGATAGAT
LOC_Os03g27280
Os.12645.1.S1_at--391--1651Chr03:15607213..15607237 (25 bp)
AGCGAGCTTTCTTTGTGGCTGATGT
LOC_Os03g27280
Os.12645.1.S1_at--866--8871Chr03:15607194..15607218 (25 bp)
TGATGTGTTGCTGTCATTCATGCCT
LOC_Os03g27280
Os.12645.1.S1_at--648--9591Chr03:15607177..15607201 (25 bp)
TCATGCCTCGTTTTTACTTCTGGGA
LOC_Os03g27280
Os.12645.1.S1_at--673--9891Chr03:15607163..15607187 (25 bp)
TACTTCTGGGATCACATATGCTTTG
LOC_Os03g27280
Os.12645.1.S1_at--107--7391Chr03:15607139..15607163 (25 bp)
GTGACCAAGAGATTGCCATCGCTGT
LOC_Os03g27280
Target Sequence 
TATTCAATTCCAGACTACGTTCGAGTTTCAGCGGACTGCAGACATCTCCTGTCCCGGATTTTCGTTGGAAATCCTGAGCA
GAGGATAACTATCCCAGAGATCAAGAACCACCCATGGTTCCTGAAGAACCTGCCCATCGAGATGACCGACGAGTACCAGA
GGAGCATGCAGCTGGCGGACATGAACACGCCGTCGCAGAGCCTGGAGGAGGTCATGGCGATCATTCAGGAGGCCCGGAAA
CCGGGCGACGCCATGAAGCTCGCCGGCGCCGGGCAGGTCGCCTGCCTGGGGAGCATGGATCTCGACGACATCGACGATAT
CGACGACATTGACATCGAGAACAGCGGGGACTTCGTGTGCGCCTTGTGATCGATAGATGCCAAATTCGATCGATCGATCA
TCAGCTGGTTGAAGACTGAAGTAGCGGGGCAGCGAGCTTTCTTTGTGGCTGATGTGTTGCTGTCATTCATGCCTCGTTTT
TACTTCTGGGATCACATATGCTTTGTGACCAAGAGATTGCCATCGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis