Browse Element(s) Details


Os.55248.1.S1_x_at

Description gb:AK107733.1
DB_XREF= gi:32992942
TID=Os.55248.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F11, full insert sequence.
FL= gb:AK107733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g272701/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55248.1.S1_x_at--898--1491Chr01:14768546..14768570 (25 bp)
AGCACAAGCAGGACGAGAGTGGCCT
NONE
Os.55248.1.S1_x_at--1050--2572Chr03:15605786..15605805 (20 bp)
AACGTCGGCGAAGATCGAGGGCACC
LOC_Os03g27270
Os.55248.1.S1_x_at--833--4491Chr01:14768418..14768442 (25 bp)
GCCGTCGGAGCCCACGTCTATTGCT
NONE
Os.55248.1.S1_x_at--733--1891Chr01:14768405..14768429 (25 bp)
ACGTCTATTGCTCCCATGGTGGTGC
NONE
Os.55248.1.S1_x_at--287--3692Chr01:20607170..20607194 (25 bp)
CTATTGCTCCCATGGTGGTGCTGTG
NONE
Os.55248.1.S1_x_at--382--7251Chr01:14768259..14768283 (25 bp)
GTCCCTGCTGGAGGAAGGCGCCAAT
NONE
Os.55248.1.S1_x_at--255--4272Chr01:20607368..20607387 (20 bp)
CCGGCGGTGGCGTAGACGCTGGCTT
NONE
Os.55248.1.S1_x_at--1060--1831Chr01:14768199..14768223 (25 bp)
ACGCTGGCTTGTTGGAGCGAGCACC
NONE
Os.55248.1.S1_x_at--22--1651Chr01:14768184..14768208 (25 bp)
AGCGAGCACCGCATCGGGATAGTAG
NONE
Os.55248.1.S1_x_at--322--3451Chr01:14768123..14768147 (25 bp)
CAGGTGGGACCACGTCGAGGGTATT
NONE
Os.55248.1.S1_x_at--168--5931Chr01:14768075..14768099 (25 bp)
GAGCAAAATCGTTTCTAATAACCAA
NONE
Target Sequence 
AGCACAAGCAGGACGAGAGTGGCCTGCCGTGCCGCTGCAGCAGGGGCGGACGGCAACGTCGGCGAAGATCGAGGGCACCC
GCCGCCGCATGAGCGACTCTCTTCCACGCCCTGCCGAGAAGCCTCGCCGCCGTCGGAGCCCACGTCTATTGCTCCCATGG
TGGTGCTGTGCCTGCGTGCGGCGGCGGCGTCGCCGCTGCAAACATCACGCCGGCGCCCCCGCATCGGCTCCGGCTCTGGT
GCCGGCGCCTGCCTCCGCCGCTCCCCCACCTGCGTCCCGATGCCGACGTCCCTGCTGGAGGAAGGCGCCAATCGCGTGCG
CCGTGGAGGTGGCCGGCGGTGGCGTAGACGCTGGCTTGTTGGAGCGAGCACCGCATCGGGATAGTAGGGGAGGAAGAGGG
GAAAGAGAGAGGAGGGAGTATGACAGGTGGGACCACGTCGAGGGTATTTTGGTTAGACAAAAATTAAAATAGAGCAAAAT
CGTTTCTAATAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55248.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis