Browse Element(s) Details


Os.12813.1.S1_a_at

Description gb:AF467728.1
DB_XREF= gi:18698661
GEN=RH3
TID=Os.12813.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12813 (NCBI UniGene Cluster)
DEF=Oryza sativa disease-resistent-related protein (RH3) mRNA, complete cds.
PROD=disease-resistent-related protein
FL= gb:AF467728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2731011/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27250Os.45975.1.S1_a_at11/113+15592989..15600235transcription factor jumonji, putative, expressed
LOC_Os03g27260Os.10256.1.S1_at11/113+15600894..1560328840S ribosomal protein S6, putative, expressed
LOC_Os03g27270Os.55248.1.S1_x_at1/113+15605304..15605966transposon protein, putative, Mutator sub-class
LOC_Os03g27280Os.12645.1.S1_at11/113+15606871..15611187Abscisic acid-inducible protein kinase, putative, expressed
LOC_Os03g27290Os.2681.1.S1_at11/113+15616618..15621297Cytochrome c oxidase subunit, putative, expressed
LOC_Os03g27300OsAffx.25250.1.S1_at8/113+15622978..15623335hypothetical protein
LOC_Os03g27310Os.12813.3.S1_x_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.1.S1_a_at11/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27310Os.12813.4.S1_x_at8/113+15624367..15626998Histone H3, putative, expressed
LOC_Os03g27320Os.10815.1.S1_at11/113+15627675..15630873Transthyretin precursor family protein, expressed
LOC_Os03g27330OsAffx.3340.1.S1_at11/113+15633411..15636524transposon protein, putative, unclassified
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12813.1.S1_a_at--1138--4251Chr03:15626108..15626223 (25 bp)
CCTGGAACTGTTGCCCTCCGTGAGA
LOC_Os03g27310
Os.12813.1.S1_a_at--845--5451Chr03:15626112..15626227 (25 bp)
GAACTGTTGCCCTCCGTGAGATTCG
LOC_Os03g27310
Os.12813.1.S1_a_at--323--10691Chr03:15626118..15626233 (25 bp)
TTGCCCTCCGTGAGATTCGCAAGTA
LOC_Os03g27310
Os.12813.1.S1_a_at--494--9971Chr03:15626232..15626256 (25 bp)
TACCAGAAGAGTACTGAGCTTTTGA
LOC_Os03g27310
Os.12813.1.S1_a_at--1145--1171Chr03:15626241..15626265 (25 bp)
AGTACTGAGCTTTTGATCAGGAAGC
LOC_Os03g27310
Os.12813.1.S1_a_at--622--4911Chr03:15626279..15626303 (25 bp)
GCTTGTTAGGGAAATTGCACAGGAC
LOC_Os03g27310
Os.12813.1.S1_a_at--554--8151Chr03:15626288..15626309 (22 bp)
GGAAATTGCACAGGACTTCAAGACC
LOC_Os03g27310
Os.12813.1.S1_a_at--67--5691Chr03:15626301..15626422 (25 bp)
GACTTCAAGACCGATCTGCGTTTCC
LOC_Os03g27310
Os.12813.1.S1_a_at--432--3231Chr03:15626405..15626427 (23 bp)
CAAGACCGATCTGCGTTTCCAGAGC
LOC_Os03g27310
Os.12813.1.S1_a_at--86--8711Chr03:15626433..15626457 (25 bp)
TGTCCTTGCCCTCCAGGAGGCTGCG
LOC_Os03g27310
Os.12813.1.S1_a_at--1133--7991Chr03:15626448..15626472 (25 bp)
GGAGGCTGCGGAGGCATACCTTGTT
LOC_Os03g27310
Target Sequence 
CCTGGAACTGTTGCCCTCCGTGAGATTCGCAAGTACCAGAAGAGTACTGAGCTTTTGATCAGGAAGCTGCCCTTCCAGAG
GCTTGTTAGGGAAATTGCACAGGACTTCAAGACCGATCTGCGTTTCCAGAGCCATGCTGTCCTTGCCCTCCAGGAGGCTG
CGGAGGCATACCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12813.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis