Browse Element(s) Details


Os.50850.1.S1_at

Description gb:AK058975.1
DB_XREF= gi:32968993
TID=Os.50850.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D05, full insert sequence.
FL= gb:AK058975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50850.1.S1_at--477--3091Chr04:22227782..22227806 (25 bp)
AATAAACTAGACCTGGGCCATTCCA
LOC_Os04g37750
Os.50850.1.S1_at--1057--7551Chr04:22227796..22227820 (25 bp)
GGGCCATTCCAGACTAACCTTATGT
LOC_Os04g37750
Os.50850.1.S1_at--389--3191Chr04:22227945..22227969 (25 bp)
CAAGTGGTTTTTGCCGATGCTTCCC
LOC_Os04g37750
Os.50850.1.S1_at--16--6291Chr04:22227992..22228016 (25 bp)
GATGATTTTCATTAATCCCCTCCGA
LOC_Os04g37750
Os.50850.1.S1_at--37--8451Chr04:22228020..22228044 (25 bp)
GGCCATGCTGATGATTCCATTGTGA
LOC_Os04g37750
Os.50850.1.S1_at--720--6771Chr04:22228065..22228089 (25 bp)
GTTAGCTGCAACACGGTCCTGGAAC
LOC_Os04g37750
Os.50850.1.S1_at--683--10011Chr04:22228090..22228114 (25 bp)
TAGAAAGGCCTTCCAGACACTGAGC
LOC_Os04g37750
Os.50850.1.S1_at--508--7771Chr04:22228122..22228146 (25 bp)
GGTGCTTTGACCTCGAATGCTTGAT
LOC_Os04g37750
Os.50850.1.S1_at--373--3251Chr04:22228210..22228234 (25 bp)
CAACCTTAGGCTATGCAGTTCTCTT
LOC_Os04g37750
Os.50850.1.S1_at--758--6051Chr04:22228251..22228275 (25 bp)
GAGTTGGCATGATCTATCCTTTTTT
LOC_Os04g37750
Os.50850.1.S1_at--312--10391Chr04:22228323..22228347 (25 bp)
TTTTCTCATTACCATTTCCTTGCAC
LOC_Os04g37750
Target Sequence 
AATAAACTAGACCTGGGCCATTCCAGACTAACCTTATGTCTGACAACCTGGAACTCATTTTGACGAACACAGTATGAGAC
AGGCCAGGAGTAACAATGATGCAGGGGATTATGCAACATGGTGATGATAATGATGATTTGAATCTGAAGCAGCCTTGAAA
CAGCAAGTGGTTTTTGCCGATGCTTCCCTGCCAGCAAATAAAGTTAGCTCGATGATTTTCATTAATCCCCTCCGAAGTGG
CCATGCTGATGATTCCATTGTGATGTGTCCTGTGGTTAAAATTGTTAGCTGCAACACGGTCCTGGAACTAGAAAGGCCTT
CCAGACACTGAGCAGCATGAGGTGCTTTGACCTCGAATGCTTGATGATGAATCGGTGGTTTATTTGTTCATCAATGCTTG
ATAATGTTTTTCTTTTGCTTGTTATTGTCAACCTTAGGCTATGCAGTTCTCTTAATGATAATGGAGACAGAGTTGGCATG
ATCTATCCTTTTTTAAAAAAACTTTGTAAGTATGACATATTCAGGTTGCTTGAAGCAACATTTTTCTCATTACCATTTCC
TTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis