Browse Element(s) Details


Os.49513.1.S1_at

Description gb:AK121979.1
DB_XREF= gi:37991602
TID=Os.49513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108K14, full insert sequence.
FL= gb:AK121979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3774010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49513.1.S1_at--1103--6351Chr04:22223646..22223670 (25 bp)
GATCCAGTCGCAAACACCATAGCCG
LOC_Os04g37740
Os.49513.1.S1_at--1101--4471Chr04:22223602..22223626 (25 bp)
GCCGGGCGATGCAATCTTGGAACGC
LOC_Os04g37740
Os.49513.1.S1_at--972--5511Chr04:22223520..22223544 (25 bp)
GAAAACCGGCAAGAGCAATCCAGCT
LOC_Os04g37740
Os.49513.1.S1_at--251--4551Chr04:22223324..22223348 (25 bp)
GCGCGTCTTGCCTGAAGGTCTCGAG
LOC_Os04g37740
Os.49513.1.S1_at--597--4051Chr04:22223269..22223293 (25 bp)
CGAGAGGCTCCCGAGGTCGTTCTTC
LOC_Os04g37740
Os.49513.1.S1_at--485--6151Chr04:22223257..22223281 (25 bp)
GAGGTCGTTCTTCTCGCGGCATTGC
LOC_Os04g37740
Os.49513.1.S1_at--1004--9431Chr04:22223220..22223244 (25 bp)
TCGGTGCTCCCGCTGTGATGAGATC
LOC_Os04g37740
Os.49513.1.S1_at--284--6311Chr04:22223204..22223228 (25 bp)
GATGAGATCCCTTTGCTGAATTTTG
LOC_Os04g37740
Os.49513.1.S1_at--654--3851Chr04:22223189..22223213 (25 bp)
CTGAATTTTGCTCCCTGCGAATAAG
LOC_Os04g37740
Os.49513.1.S1_at--1162--6751Chr04:22223164..22223188 (25 bp)
GTTACACCATGTTCTTGATAAGGGA
LOC_Os04g37740
Os.49513.1.S1_at--117--7891NONE
GGTTACGAGTTTGAGACCCCAAATG
NONE
Target Sequence 
GATCCAGTCGCAAACACCATAGCCGCAGCCCAGCAAGCGGCTGCGCCGGGCGATGCAATCTTGGAACGCCAAGAAGAAGA
AGAGGAAGCAGAACAGGAGGACCAAGGAGCGCCGCCGCACATGGAGGAAAACCGGCAAGAGCAATCCAGCTCACCGGATC
CATTGCCGCCGCCGCGCAACGTGCGGCGCGCGGCTTCCATGGACGCGGCGATCGTGTCGACCGCCGCAGAGGTCGCGGCG
CTAGAGCGGCTGCCGGAGGCGGCTCCTGAAGAGGAGCAGAGCGGCGGCGGCGGCGGCGGCGACAAGCGCGGCGGGGCTCC
TGGCGCGTCTTGCCTGAAGGTCTCGAGCTCCGGCCGCCTGAGCAACCTCGGCGCCGCCGAGAGGCTCCCGAGGTCGTTCT
TCTCGCGGCATTGCCGTGCCCGGAGCTCGGTGCTCCCGCTGTGATGAGATCCCTTTGCTGAATTTTGCTCCCTGCGAATA
AGGTTACACCATGTTCTTGATAAGGGATCGATTAGTGTGTAAATATTATACTTGGAATCCTAAAAAGTGAGGGTTACGAG
TTTGAGACCCCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis