Browse Element(s) Details


Os.51133.1.S1_at

Description gb:AK061063.1
DB_XREF= gi:32971081
TID=Os.51133.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B04, full insert sequence.
FL= gb:AK061063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3772011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51133.1.S1_at--531--7531Chr04:22215141..22215165 (25 bp)
GTGGAAGCTGTACCAGAACCTCGCT
LOC_Os04g37720
Os.51133.1.S1_at--323--5431Chr04:22215156..22215180 (25 bp)
GAACCTCGCTGTGATTTACGTCGAC
LOC_Os04g37720
Os.51133.1.S1_at--1026--1831Chr04:22215179..22215203 (25 bp)
ACGCTGGTCAGCTTGTTGGTTCAGG
LOC_Os04g37720
Os.51133.1.S1_at--1068--1091Chr04:22215245..22215269 (25 bp)
AGTGGATCACATACGATTTCCTCGT
LOC_Os04g37720
Os.51133.1.S1_at--140--211Chr04:22215260..22215284 (25 bp)
ATTTCCTCGTAATCTTACACACCGG
LOC_Os04g37720
Os.51133.1.S1_at--588--8151Chr04:22215317..22215341 (25 bp)
GGAAATCCATGCTGATGACTTCACA
LOC_Os04g37720
Os.51133.1.S1_at--744--4051Chr04:22215350..22215374 (25 bp)
CGAGTCGGAACTACATCTGCGTGCT
LOC_Os04g37720
Os.51133.1.S1_at--102--571Chr04:22215378..22215402 (25 bp)
ATCCTACCTGATGTGCGGGCAGCTG
LOC_Os04g37720
Os.51133.1.S1_at--170--1231Chr04:22215452..22215476 (25 bp)
AGTTCGACATCTCTGCCTGCAATAG
LOC_Os04g37720
Os.51133.1.S1_at--367--2751Chr04:22215572..22215596 (25 bp)
AAGAACGCTCTTCCTGAGTGGCCAT
LOC_Os04g37720
Os.51133.1.S1_at--564--1091Chr04:22215588..22215612 (25 bp)
AGTGGCCATCCATGCTGAAACTGTT
LOC_Os04g37720
Target Sequence 
GTGGAAGCTGTACCAGAACCTCGCTGTGATTTACGTCGACGCTGGTCAGCTTGTTGGTTCAGGAAACTCGCTGGTGGAAG
CAGAGGCGAAGATCAGCCGGAGGGAGTGGATCACATACGATTTCCTCGTAATCTTACACACCGGGCTCGGCAACCGGGAT
AGAATCAAGGACATTTGGAAATCCATGCTGATGACTTCACAGAGGATGACGAGTCGGAACTACATCTGCGTGCTCTCATC
CTACCTGATGTGCGGGCAGCTGAAGGATGCCGGGGAAGTCATCGACCAGTGGCAGCGGTCGAAAGCCCCAGAGTTCGACA
TCTCTGCCTGCAATAGGCTGTTTGATGCCTTCCTGAACGCCGGTTTCACCGACACGGCAAATAGCTTCAGGGAACTGATG
CTGCAAAAGAGCTGTATACTGACAAGCAGGCAAGAACGCTCTTCCTGAGTGGCCATCCATGCTGAAACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis